KEGG T01002: 234699

Mus musculus (house mouse): 234699

Entry

234699            CDS       T01002

Symbol

Edc4

Name

(RefSeq) enhancer of mRNA-decapping protein 4 isoform 1

K12616

enhancer of mRNA-decapping protein 4

Organism

mmu Mus musculus (house mouse)

Pathway

mmu03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:mmu00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    234699 (Edc4)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    234699 (Edc4)
Messenger RNA biogenesis [BR:mmu03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     234699 (Edc4)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     234699 (Edc4)

SSDB

Motif

Pfam:

Ge1_WD40 EDC4_C WD40 WD40_WDHD1_1st Beta-prop_WDR5 Beta-prop_EDC4L Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_Prp19 DUF445 Beta-prop_HPS5 Beta-prop_IFT122_1st WDR55 TBC1D_hel

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

MGI:

Ensembl:

UniProt:

Position

8:106607506..106619857

AA seq 1406 aa
MASCASIDIEDATQHLRDILKLDRPAGGSNAESQRPSSAYNGDLNGLLVPDPLSSGDGNS
TNKPGIRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVKGKIQEEILVHIRQPEGTALNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHNTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGTESSHGAGALESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLSTHTA
HEDFTFGESRPELGSEGLASAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PTASLQQISASPSSSSSSSSSSSSSSSSSSSSLTAVSAVSSSSAMDPSLPRPPEELTLSP
KLQLDGSLTLNSSSSSLQASPRSLLPGLLPGPADKLISKGPGQVSTAASALSLDLQEVEP
LGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLIEPDSMASAASA
LHLLSPRPRQGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEVATPDSQVWPTAPDITR
ETCSTLTESPRNGLQEKHKSLAFHRPPYHLLQQRDSQDTSAEQSDHDDEVASLASASGGF
GSKIPTPRLPSKDWKTKGSPRTSPKLKRKSKKDDGDSAVGSRLTEHQVAEPPEDWPALIW
QQQRELAELWHNQEELLQRLCAQLEGLQSTVTDHVERALETRHEQEQRRLERALAEGQQR
GGQLQEQLTQQLSQALSSAVAGRLERSVRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLT
AVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQ
QINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVSSS
VRAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVP
SAHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQ
PVLLSLIQQLASDLGTRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQA
DPHNSLSKAARRLSLMLHGLVTPSLP

NT seq 4221 nt +upstreamnt +downstreamnt
atggcctcctgcgcgagcatcgacattgaggacgccacgcagcatctgcgggacatactc
aaactggaccggcccgccggaggttccaatgccgaaagccaaaggccatccagtgcctac
aatggagacctcaatgggctcctggtccccgacccgctcagttcaggtgatggtaactca
acgaacaaacctggtatacggaccatgccacccattaacctgcaggaaaagcaggtcatt
tgcctctctggagatgacagctccacctgcattgggattttagccaaggaagtggaaatt
gtggccagcagtgattctagcatttccagcaaggctcgggggagcaacaaggtgaaaatc
cagcctgtcgccaagtatgactgggagcagaaatactactatggcaacctgattgcagtg
tctaactccttcttggcatacgccattagggctgccaacaatggctcagcaatggtccgt
gtgatcagtgtcagcacttcggagcggaccctgctcaaaggtttcacaggcagtgtggct
gatcttgcttttgcacacctcaactctccacagctcgcctgcctggatgaggctggcaat
ctttttgtgtggcgcttggctcttgttaagggtaaaattcaagaagagattttagtccat
atccggcagccagagggtacagcgctgaaccacttccgaaggatcatctggtgccctttc
atccccgaggagagtgaggactgttgtgaggagagcagcccgacagtggccctgctgcat
gaggatcgggctgaggtgtgggacttggatatgcttcgctccagccacaacacctggcct
gtggatgtcagccaaatcaagcaaggctttattgtggtgaaaggccatagcacgtgccta
agtgaaggagccctctcccctgatgggactgtcctggctaccgcaagccatgatggcttt
gtcaagttctggcagatctatattgaaggtcaggatgagccaaggtgtctgcatgaatgg
aagcctcatgatgggaggcctctttcttgcctcctgttctgtgataaccataagaaacag
gatcctgaggtcccgttctggaggttcctcataaccggcgccgaccagaatcgagagctg
aagatgtggtgcacagtgtcctggacctgcctgcaaaccattcgcttctccccagatatc
ttcagctcagtgagtgtgcctcccagcctcaaagtttgtttggacctctcagcagagtat
ttgattcttagtgatgtgcaacgaaaggtcctctatgtgatggagctgctgcagaaccag
gacgagggccgcgcgtgctttagttctatctctgagttcctgctcacccaccctgtgctg
agctttggcatccaggttgtcagtcgctgccggctacggcacactgaggtcctgcctgct
gaggaggagaatgacagtctggggaccgagagttcccatggagctggagccttggaatcc
gcagctggtgtgcttatcaagctcttttgtgtgcacactaaggcactacaagatgtgcag
atccgcttccagccacagctgaaccctgatgtggtggccccactctctacccacactgcc
cacgaggacttcacatttggagagtctcgacctgaactaggctccgaggggctagcttca
gctgctcatggttcccagcctgacctgcggcgcattgtggaactgcctgctcctgcagac
ttcctcagtctgagcagtgagaccaagcccaagttgatgacacctgatgctttcatgaca
cctactgcctccctgcagcagatctctgcatcccctagtagtagcagcagcagtagcagc
agcagcagtagcagcagcagcagcagcagcagctctctaacagctgtgtctgctgtgagc
agctcctcagccatggacccttccttgcccagaccacctgaggagctgaccttgagcccc
aagctgcagctagatggcagcctgacgctaaacagcagcagcagcagcctgcaggcaagc
cctcgaagcctccttccgggcctgctcccaggcccagctgacaagttgatttccaaggga
cctggtcaggtatccactgctgcctctgcactgtccttggatttgcaggaagtggagcca
ttagggctaccccaggcctccccaagtcgaacccgttctcctgatgtgatctcctcagca
tccactgccctgtcccaggacattcctgaaatcgcatctgaggccctgtcccgtggcttt
ggctcctctgttcctgagggcctcattgagccagacagcatggcctcagctgcctcagca
ctacacctactctctcctcggcccaggcaaggccctgagcttggctctcagctgggtctg
gatggaggccctggagatggggataggcatagtaccccttccctgctggaagcagccctg
acccaggaagttgcaacccctgacagtcaagtctggcctacggcacctgacattactcgt
gagacctgtagcacactgacagaaagccccaggaatggcctccaggaaaagcacaaaagt
ctggctttccacaggccaccttatcacttgctgcagcaacgtgacagtcaggacacaagt
gctgagcaaagtgaccatgatgatgaggttgccagccttgcctctgcctcaggaggtttt
ggcagcaaaattcctactccacggctgccttccaaggattggaagacgaagggatcccct
cggacgtcacctaagctcaagagaaaaagcaagaaggatgatggggattcagctgtggga
tcccggctcacagagcaccaggtggcagagccccctgaagactggccagcactaatttgg
cagcagcaaagagagctggcagagctatggcacaaccaagaagaactgctacagcgtctc
tgtgcccagcttgaaggtcttcagagtactgtcacagaccatgtagagcgtgccctggag
acgcggcatgagcaggagcaacggcggctggaacgggcactggctgaggggcagcaacgg
ggtgggcagctgcaggagcagctgacacagcagctatcccaggcattgtcttcagctgtg
gctgggcggctagagcgcagcgtaagggatgaaatcaagaaaacggttcctccatgtgtc
tccagaagtctggagcctgttgcaggtcaactaagcaactcagtggctaccaagcttaca
gctgtggaaggcagcatgaaagagaatatctctaagctactcaagtccaagaacttaaca
gatgccattgcccgagcagctgcagacacgttacagggaccaatgcaggctgcctaccgg
gaagccttccagagtgtggtactgccagcttttgagaagagttgccaggctatgttccag
caaatcaatgacagctttaggctgggcacacaggaatatttgcagcagctggagagtcac
atgaagagccggaaggcccgtgaacaagaagctagggagcctgtgctggcccagcttcgg
ggcctggtcagcacactgcagagtgccaccgagcagatggcggccactgtatctagcagt
gttcgggccgaggtgcaacaccagctgcatgtggctgtgggcagcttgcaggagtcaatc
ttagcacaagtacagcgcattgtcaagggtgaagtgagtgtggcacttaaggagcagcag
gccaccgtcacttccagcatcatgcaggctatgcgttcagctgctggcacacctgtcccc
tctgcccaccttgactgccaggcccaacaagcccatatcttgcagttactgcagcagggc
cacctcaatcaggccttccagcaggcactgactgctgctgatctcaatctggtgctgtat
gtgtgtgaaactgtcgacccagcccaggtttttgggcagccgccctgtccactatcccag
cctgttctcctttccctaatccagcagctagcatctgaccttggaactagaagtgacctc
aagctcagctacttggaagaagctgtgatgcacctggaccacagcgatcccatcactcga
gaccacatgggctctgtcatggctcaggtgcgccagaagctcttccagttcctgcaggct
gatccacacaactcacttagcaaagctgcccgccgcctcagcctaatgttacacggcctt
gtgacccctagcctcccttag

All links

Gene (17)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (12)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (9)   
DNA sequence (41)   
   RefSeq(nuc) (9)   
   GenBank (16)   
   EMBL (16)   
Protein domain (16)   
   Pfam (16)   
All databases (86)   

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