KEGG   Mus musculus (house mouse): 235040
Entry
235040            CDS       T01002                                 
Symbol
Atg4d, 9830134P12Rik, APG4-D, Apg4d, Atg4dl, Autl4
Name
(RefSeq) autophagy related 4D, cysteine peptidase
  KO
K08342  cysteine protease ATG4 [EC:3.4.22.-]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04136  Autophagy - other
mmu04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    235040 (Atg4d)
   04136 Autophagy - other
    235040 (Atg4d)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:mmu01002]
    235040 (Atg4d)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    235040 (Atg4d)
   03029 Mitochondrial biogenesis [BR:mmu03029]
    235040 (Atg4d)
Peptidases and inhibitors [BR:mmu01002]
 Cysteine peptidases
  Family C54: Aut2 peptidase family
   235040 (Atg4d)
Membrane trafficking [BR:mmu04131]
 Autophagy
  Autophagosome formation proteins
   Atg8 conjugation proteins
    235040 (Atg4d)
Mitochondrial biogenesis [BR:mmu03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    235040 (Atg4d)
SSDB
Motif
Pfam: Peptidase_C54
Other DBs
NCBI-GeneID: 235040
NCBI-ProteinID: NP_705811
MGI: 2444308
Ensembl: ENSMUSG00000002820
UniProt: Q8BGV9
Position
9:21176496..21186133
AA seq 474 aa
MNSVSPAAAQYRSGSSEDARRADCRRPRGQTRIPDPSNLGPSGSGVAALGSSGTDPAEPD
EVDKFKAKFLTAWNNVKYGWAVKSRTSFSKISTVHLCGRCYHFEGEGDIQRFQRDFVSRL
WLTYRRDFPPLAGGSLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWRWVEGTGLASSEMP
GPASPSRCRGPGRRGPPRWTQGALEMEQDRWHRRIVSWFADHPRAPFGLHRLVELGRSSG
KKAGDWYGPSVVAHILRKAVESCSEVSRLVVYVSQDCTVYKADVARLLSWPDPTAEWKSV
VILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYC
QPTVDVSQPSFPLESFHCTSPRKMAFAKMDPSCTVGFYAGNRKEFETLCSELMRILSSSS
VTERYPMFTVAEGHAQDHSLDALCTQLSQPTLRLPCTGRLLKAKRPSSEDFVFL
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgaactccgtgtcgccggctgcggcgcagtaccgcagcgggagctcggaggacgcgcgc
cgggccgattgtcgccggccgaggggacaaacccgtatcccggatcctagcaacctggga
ccttcggggtccggagtggcagctctcggttcatctgggacagaccccgccgagcccgac
gaggtggacaagttcaaagccaagttcctgacagcctggaacaacgtcaagtatggttgg
gcagttaaaagccggaccagcttcagcaagatctccactgttcacctctgcgggcgatgc
taccatttcgagggagagggtgacatccagcggtttcaaagggactttgtatctcgacta
tggctcacatatcgccgggacttcccaccccttgctggaggcagcctgacctcagactgt
ggctggggatgtatgttacgaagtggtcagatgatgctggcccagggcctgctcctgcat
tttctgcctagagactggaggtgggtggaaggcacaggcctggcttcctctgagatgcca
gggccagcctctcccagtcgctgccgagggcctggtcgtcgtgggcccccaagatggaca
cagggtgcactggagatggagcaggaccgttggcaccggcggattgtttcctggttcgct
gatcatccacgggcccccttcggtctacatcggctagtggagcttgggcggagctcgggc
aagaaggcaggagactggtacgggccctctgtggtggcacacatcctcaggaaagctgtg
gagagttgctcagaagtcagccgcctggtggtgtacgtctctcaggactgcacagtgtac
aaggcagatgtagcacgcctgctgtcctggccagatcctacagcggagtggaaatctgtg
gtcatcctggtgcctgtacgactgggcggggagacccttaaccctgtgtacgtgccctgt
gtgaaggagcttctgcgttcagaactctgtctgggcatcatgggcggcaagccccggcat
tcactgtacttcattggctatcaggatgactttctgctctacctggatcctcactactgc
cagcccacagtggatgtcagccagcccagcttccccctggagtcctttcactgcacctcg
ccccgcaagatggcctttgccaagatggaccccagctgtaccgtggggttctatgctggg
aacaggaaggagtttgagacactctgctcggagctgatgaggatcctcagctcctcctca
gtcacggaacggtaccccatgttcacagtggctgaaggccacgctcaggaccacagcctg
gatgccctctgcacccagctgtcccagcccacactgcggctaccttgcacaggacgacta
ctcaaggccaaaaggcccagctccgaggactttgtgtttttataa

  All links  
Gene (19)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (30)   
   RefSeq(nuc) (4)   
   GenBank (13)   
   EMBL (13)   
Protein domain (1)   
   Pfam (1)   
All databases (56)   

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