KEGG   Mus musculus (house mouse): 240255
Entry
240255            CDS       T01002                                 
Symbol
Ythdc2, 3010002F02Rik, mYTHDC2
Name
(RefSeq) YTH domain containing 2
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mmu03041]
    240255 (Ythdc2)
Enzymes [BR:mmu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     240255 (Ythdc2)
Spliceosome [BR:mmu03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    240255 (Ythdc2)
SSDB
Motif
Pfam: YTH HA2_C OB_NTP_bind Helicase_C R3H DEAD Ank_2 HA2_N AAA_19 nSTAND3 Ank AAA_22 ATPase PhoH AAA_16 AAA_7 UvrD-helicase AAA_29 Ank_4 ABC_tran T2SSE SRP54 AAA_23
Other DBs
NCBI-GeneID: 240255
NCBI-ProteinID: NP_001156485
MGI: 2448561
Ensembl: ENSMUSG00000034653
UniProt: B2RR83
Position
18:44961521..45022782
AA seq 1445 aa
MSRPSSVSPRPPAPSGGGTGGGGGGSGGGGGGGGGGPASCGPGGGGRAKGLKDIRIDEEV
KIAVNIALERFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKK
DGSETAHAMMTCNLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSK
TSGRLNNGIPQVPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQ
IPQFLLDDCFKNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPK
TLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLI
LSSAALDVNLFIRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREE
KQQTTLTEWYSAQENTFKPESQRQRAVASVSEEYDLLDDGGDAVFSQLTEKDVNCLEPWL
IKEMDACLSDIWLHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQ
LISMGANVHSKASNGWMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLS
AEDRELLKAYHHSFDDEKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFD
DKRFADNTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVID
SGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQT
PELLRMPLQELCLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDL
TELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLC
RKRFTAGTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLR
ASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENVILTGPKEKKVRFHP
TSVLSQPQYKKIPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCG
PARLASNALQEPSSFRADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQ
LRQKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSE
ELPLASSWRSNNSRKSTADTEFADGSTTGERVLMKSPSPALHPPQKYKDRGILHPKRSTD
DRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQ
QKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGL
GGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGE
KTTSD
NT seq 4338 nt   +upstreamnt  +downstreamnt
atgtccaggccgagcagcgtctcgccgcgtccgccggctcctagcggaggcggcacgggc
ggcggtggaggtggcagtggcggcggcggtggcggtggcggcggcggcccagcttcgtgt
ggtcctggaggcggtggccgggccaagggcctcaaagacattcgtatcgacgaggaggtg
aagatcgccgtcaacatcgctctggagcgcttccgctacggtgaccagagagaaatggaa
ttcccttcttctttgaccagtacggaaagagcctttattcaccgactaagtcaatctctt
ggtttagtttctaaaagtaaaggaaagggagcaaatagatacctaactgtgaagaagaaa
gatggatcagaaacagctcatgcaatgatgacctgtaatttgactcataacacaaaacat
gctgttaggagcctaattcagagatttcctgtcaccaataaagaacgtactgaactccta
cctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaaccgagaaatgagcaag
acaagcgggcgactcaacaatggcattcctcaagttcctgtgaaaaggggagagtctgaa
tttgactcattcaggcagtctttaccagtttttgagaaacaagaagaaattgttaaaata
attaaggaaaataaagtagttttgatagtaggagaaactgggtctggaaagaccacacag
attcctcagttcctgttagatgattgctttaaaaatggcatcccctgccgaatattttgt
actcaaccaagacgactagcagcgattgctgtggctgaaagagttgctgcagagagaaga
gaaagaattggtcaaacaattggttatcagatccgattagaaagcagggtttcgccaaag
acacttctgacattttgcactaatggggtattgcttcgtacattgatggcaggtgatagc
acattgtcaactgtgacccatgttattgtggatgaagtgcatgaaagggatcgattcagt
gattttttgcttactaagttaagagatttgttgcaaaagcacccaactttgaaactaatt
ctttcgagtgctgccttggatgtgaacctcttcataagatattttggaagttgtccagtg
atatatatacagggaagaccatttgaagtaaaagaaatgtttctggaagatattttaaga
actacaggatataccaacaaagaaatgttaaagtacaaaaaggaaaagcaacgagaggag
aaacaacagaccaccctcacagagtggtactcagctcaagagaataccttcaagcctgag
tctcagaggcagagagctgttgctagtgtgtctgaagagtatgacttattggatgatgga
ggtgatgctgtcttcagtcagctgacagaaaaagatgtgaattgccttgaaccatggtta
atcaaggagatggatgcctgcctttctgacatatggctgcataaagatgttgatgctttt
gctcaggtctttcatcttattttaactgaaaatgttagtgttgattataggcatagtgag
accagtgcaacagctctgatggttgctgcaggacggggctttacgagccaagtagagcag
ttaattagtatgggagccaatgtccacagtaaagcatcaaatggctggatggctttagat
tgggctaagcactttggacagactgaaattgtggatcttctagaatcttacagtgcttca
ttggaatttggaaatctagatgaaagttccttggttcagacaaatgggaatgacctcagt
gcagaagacagagagctgttgaaagcttaccatcatagttttgatgatgagaaagtagac
ttggatttgatcatgcatctcctatataatatctgccatagctgtgatgctggtgcaata
ttaatttttctacctggatatgatgaaattgttggtttgagggatcgtatcctctttgat
gacaagcggtttgctgacaatacacataggtatcaagtctttatgcttcattcaaatatg
cagacatctgatcaaaagaaggtattaaaaaatccacctgcaggtgtccgaaaaataatc
ctttccaccaatattgctgagacgagcatcactgtcaatgatgttgtgtttgttattgat
tctggtaaggtgaaagagaaatcctttgatgcactgaattttgttacaatgttaaaaatg
gtatggatttccaaagctagtgcaatacagcgcaaaggcagagcgggacggtgtagacct
ggaatttgtttccgtctgtttagtagacttcgatttcagaacatgctggaatttcagacg
ccagaactcttgagaatgccattgcaggaactttgtttacataccaagctgttagcccca
gttaactgcaccattgccgacttccttatgaaagcccctgaaccgcctccagctttaatt
gtgagaaatgctgtgcagatgcttaagacaatagatgcaatggatgcatgggaagatctg
actgaacttgggtatcatttggctgatttgccagtagaaccgcatcttgggaaaatggtc
ctgtgtgcagtggttttgaagtgtctggaccccatccttacaattgcctgcacgctcgct
taccgtgacccttttgtcctgcctacccaggcctctcagaaacgggcagctatgctttgt
aggaaacgcttcactgcagggactttcagtgaccacatggcacttctgagagcatttcag
gcatggcagaaagcacgaagtgatgggtgggagcgagccttttgtgaaaagaattttctt
tcacaagctactatggaaatcattataggcatgagaacacagttgcttggtcagcttaga
gcatcaggttttgttagagcacgaggtggtggtgacattcgagatgttaatacaaactcc
gagaactgggctgttgttaaagctgcattggtagcaggcatgtatcctaatttagtccac
gtggacagagagaatgtaatattgacagggccaaaggaaaagaaagtacgctttcatccc
acttcagttctcagtcaacctcaatacaaaaagattcctcccgccaatggtcaggctgca
gcgattcaggcattgcccacagattggcttatttatgatgaaatgaccagagcccatcga
attgctaatatcagatgttgttcagcagtgacacctgttactgtcctggtgttctgtgga
ccagcaagactggcaagtaacgctcttcaggaaccttcatcctttagagcggatggtatt
cccaatgacagcagtgacagtgagatggaagacagaactactgccaatttggctgctttg
aagcttgatgaatggcttaacttcaaactagagccagaggctgccagtttattgctacag
ctcagacagaagtggcatagtttgtttttacgccgaatgagagcgccatctaaaccttgg
tctcaagtcgatgaagctaccatacgagcaattatagctgttttaagcactgaagaacag
tctgcaggtttacagcagccatctggaattggccagcggccaagacccatgtcttcagaa
gaacttcctttggcttcatcttggagatccaataatagtaggaaaagtacagctgacact
gagtttgcggatggatctactactggagaaagagtactgatgaaatctccatctccagcc
ttacatccacctcagaagtacaaagatagaggaattttacatcctaagcggagcaccgat
gaccggtccgatcaatcatctgtgaaatccacagacagcagcagttacccaagtccttgt
gccagcccctctcctccatcctcagggaagggatcaaaatctccttcaccaagaccaaac
atgcctattcgttacttcataatgaagagtagcaatctgagaaaccttgaaatttctcaa
cagaagggtatctggtctacaacccctagtaatgagcggaagctaaatcgagcgttttgg
gagagcagcatggtttacttggtattttctgttcaaggatctggacatttccagggattt
tctaggatgtcttctgagataggaagggagaagagccaggactgggggtcagctggacta
ggtggagtatttaaagtggagtggatacgcaaagaaagccttccctttcagtttgcacac
catttactcaatccttggaacgacaacaagaaagtacagataagcagagatgggcaggag
ctagaacctcaggttggggaacagttgctccagttatgggaacgccttccattgggagaa
aaaacaacttctgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (18)   
   RefSeq(nuc) (4)   
   GenBank (7)   
   EMBL (7)   
Protein domain (23)   
   Pfam (23)   
All databases (71)   

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