KEGG   Mus musculus (house mouse): 245944
Entry
245944            CDS       T01002                                 
Symbol
Vps54, Hcc8, Vps54l, mSLP8, wr
Name
(RefSeq) VPS54 GARP complex subunit
  KO
K17600  vacuolar protein sorting-associated protein 54
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mmu01009]
    245944 (Vps54)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    245944 (Vps54)
Protein phosphatases and associated proteins [BR:mmu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     245944 (Vps54)
Membrane trafficking [BR:mmu04131]
 Endosome - Golgi transport
  Tethering complex
   GARP complex
    245944 (Vps54)
SSDB
Motif
Pfam: Vps54 Vps54_N SBP_bac_6 EXOC6_Sec15_N
Other DBs
NCBI-GeneID: 245944
NCBI-ProteinID: NP_620692
MGI: 2178798
Ensembl: ENSMUSG00000020128
UniProt: Q5SPW0 Q91ZJ4
Structure
Position
11:21189032..21271133
AA seq 977 aa
MASSHSSSPVPQGSSSDVFFKKEVDPTKHIRPVQSLPDVCPKEPTGDSHTLCVAPSLVTD
QHRWTVYHSKVNLPAALNDPTLAKRESDFFTKTWGLDFVDTEVIPSLYLPQISKENFIAY
QQEISQREKIHERCKNICPPKDTFDRTLLHIHDKSRTDLEQVPKIFMKPDFALDDSLTFN
SVLPWSHFNTAGGKGSRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHE
LQDYLKKTTQAVKMLRDKIAQIDKVMCEGSLQILRLALTRNNCVKVYNKLKLMATVHQTQ
PTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFST
YSHSDLNRPLEGECQVLEEERLVSLVFGLLKQRKLNFLEIYGEEMIITAKNIIKERVINK
VSQIEEIDTDVVVKLADQMRMLNFPQWIDLLKDIFSKFTVFLQRVKATLNIIHSVVLSVL
EKSQRTRELEEIPQQRSAGKDSSLDTDVAYLTHEGWFISDAFSEGEPASAAVDTTSQRNT
SPHSEPCSSDSVSEPECTTDSSSSKEQTSACAPPGGIEIIVSEDMRLTDLELGKLASNIQ
ELLCNASDVCHDRAVKFLMSRAKDGFLEKLNSTEFIALSRLMETFIVDTEQICGRKSTSL
LGALQSQANKFVNRFHEERRTKLSLLLDNERWKQADVPAEFQDLVDSIADGKIALPEKKP
VVTEERKPADVLVVEGHQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLTDLLKYF
NSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQWSML
RHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSPCFRNICKQMTKMHEA
IFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALK
GLKDLDLNMAEIWEQKR
NT seq 2934 nt   +upstreamnt  +downstreamnt
atggcttcaagccacagttcttctccagtgcctcaaggaagcagcagtgatgttttcttt
aaaaaagaggtagatccaacaaaacacattcgacctgtgcagtcactgccagatgtgtgt
cccaaggaacccacaggtgattcacatactttatgtgttgccccatctctagttacagat
caacatagatggactgtgtatcattccaaagtaaatctcccagcagcattaaatgatcct
acactagcaaaaagagaatctgacttcttcacaaaaacttggggattggactttgtggac
actgaagtcataccttcactctacctcccacagatcagcaaggagaattttatagcatat
cagcaggagatctctcagagagagaagattcatgagagatgcaagaatatttgtcctcct
aaagatacctttgacaggactcttttacatattcatgataaatccaggacagatctggag
caagtacctaagatttttatgaaaccagattttgccttggatgattctttaacttttaat
tcagttttaccatggtctcattttaatactgctggtgggaaaggaagtcgcgacgcagct
tcttccaagttgcttcaggaaaagctgagccattatctggatattgtggaagtaaacatt
gctcaccagatctctctacgttcagaagcattttttcatgcaatgacctctcaacacgaa
ttgcaggactacctcaagaaaactacccaggctgtaaaaatgcttcgagataaaattgca
cagattgataaagttatgtgtgaaggatcactacagattttaagactggcacttaccaga
aataattgtgttaaagtatacaataaactgaagttaatggccactgtacaccaaactcag
cctacagtgcaggtgttgttatctacttctgaatttgttggagcgttggacttaatagca
acaactcaagaggttctgcagcaggagcttcagggcattcacagcttccggcatttggga
tcacagctttgtgaattagaaaagctgattgataaaatgatgattgcagaattttctact
tattctcatagtgacttaaatagaccactggaaggtgaatgccaagttttagaagaggaa
agattagtatctcttgtatttgggcttttgaaacaaagaaaacttaattttttagaaatc
tatggtgaagaaatgattattacagcaaagaacatcattaaagagcgtgtgattaataaa
gtttcacaaatagaagaaatagacacagacgttgttgtaaagcttgcagatcaaatgaga
atgttgaattttccccagtggattgatctgttaaaggacattttctctaagtttacagtt
ttcctacagagagttaaggcaacattgaatattatccacagtgttgttctgtcagttctt
gagaaaagccaaaggactagagaattggaagagatcccacagcagaggagcgctgggaag
gacagctccttggacacagacgtggcttacctgacacacgagggctggttcataagtgat
gctttcagtgagggtgagccagcatctgcggcggttgatactacctctcaaagaaacacg
tctccacatagcgagccctgcagcagtgattcggtatcagaaccagaatgtactactgat
tcttcatccagcaaggagcagacatcagcgtgtgctcctccaggaggtatagagattata
gtcagtgaagacatgaggttaactgacttggagctaggaaaactagcaagtaacatccag
gagttactgtgtaatgcttcagatgtatgccatgatcgagctgtcaaatttctcatgtca
agagcaaaggacggttttcttgaaaaattgaattccacggaattcatagcactctcgaga
ttaatggagacattcatagtggacactgaacagatctgtgggaggaagagcacgtcactg
cttggggcccttcagagccaagcaaataagtttgtgaacaggtttcatgaagagaggcgg
accaagctcagcctcctcttagacaacgagcgttggaagcaggctgatgttcctgcagaa
tttcaggatcttgttgattctatagcggatggaaagattgctttacctgaaaaaaagcca
gtggttacagaagaaaggaagccagctgatgttcttgttgttgagggacaccagtatgca
gttgtcggaaccgtcttgctgttaataagaatcattcttgaatattgccagtgtgtggat
aacatcccctccgtcactactgacatgctcactcgcctgacagatctgctgaagtacttc
aattcaagaagttgccagttagttcttggagctggtgctttgcaagttgttggactaaaa
acaattactacaaaaaacttggccctctcttcacggtgtctgcagttgattgtgcactac
attcccgtgatccgggctcactttgaagcccgactgccccccaagcaatggagcatgctt
agacattttgatcacatcacaaaggattaccatgatcatatagctgaaatttcagctaag
cttgtagcgataatggatagcctatttgataagctgttatcaaagtatgaggtgaaagct
cctgttccttccccgtgtttcaggaatatttgtaagcaaatgacaaaaatgcatgaagct
atatttgatcttcttcccgaagaacaaacacagatgttatttttaagaattaatgcaagt
tacaaactccacttgaaaaaacagttatcacacttaaatgtaataaatgacggaggacct
caaaatgggttggtcacagcagatgtagctttttacactggaaatcttcaagccttaaaa
ggccttaaagatctggatctaaatatggccgagatctgggaacagaagaggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (38)   
   RefSeq(nuc) (6)   
   GenBank (16)   
   EMBL (16)   
3D Structure (2)   
   PDB (2)   
Protein domain (4)   
   Pfam (4)   
All databases (77)   

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