KEGG   Mus musculus (house mouse): 269338
Entry
269338            CDS       T01002                                 
Symbol
Vps39, A230065P22Rik, Vam6, Vam6P, mVam6
Name
(RefSeq) VPS39 HOPS complex subunit
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04140  Autophagy - animal
mmu04148  Efferocytosis
mmu05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    269338 (Vps39)
   04148 Efferocytosis
    269338 (Vps39)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    269338 (Vps39)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    269338 (Vps39)
Membrane trafficking [BR:mmu04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    269338 (Vps39)
SSDB
Motif
Pfam: Vps39_1 CNH zf-Vps39_C TPR_Vps41 Clathrin KCTD11_21_C DUF4145
Other DBs
NCBI-GeneID: 269338
NCBI-ProteinID: NP_671495
MGI: 2443189
Ensembl: ENSMUSG00000027291
UniProt: Q8R5L3 Q5KU38 Q3USV9
Position
2:complement(120146942..120183618)
AA seq 886 aa
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
LNWTDIPVAMEHQPPYIVAVLPRYVEIRTLEPRLLVQSIELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLNFLIENFKALA
IPYLEHIIHVWEETGSQFHNCLIQLYCEKVQSLMKDYLLSLPTGKSPVPAGEEGGELGEY
RQKLLMFLEISSHYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAK
EYCHKHYDQNKEGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHYS
KLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT
NT seq 2661 nt   +upstreamnt  +downstreamnt
atgcatgacgctttcgagccggtgccgatcctggaaaagcttcccctgcagatcgactgc
ctggctgcctgggaggaatggcttcttgttggaaccaagcaagggcatcttcttctctac
aggattcggaaggatgttgtgccagcagatgtagcctcacctgaaagcggcagttgtaac
aggtttgaggtaacactagagaagtccaataagaacttttccaaaaagatccagcagatc
catgtggtttcccagtttaagattctggtcagcttgttagaaaacaacatttatgtccat
gacttactgacatttcaacaaatcactacagtctcaaaggccaagggcgcatcactgttc
acctgtgacctccagcacactgagacgggtgaggaggtgttgcggatgtgtgtggcagtg
aggaagaagctgcagctgtacttctggaaggacagagaattccacgaactgcagggagac
tttagtgtgccagatgtgcccaagtccatggcatggtgtgaaaattctatctgcgttggt
ttcaagagagactattacctgatcagggtggatggaaaggggtccatcaaagagctcttc
ccaacaggaaagcagctggagcccttagttgcccctctggcagatggaaaagtggctgtg
ggtcaggatgatctgactgtggtgcttaacgaggaaggcatctgcactcagaaatgcgcc
ctgaactggacagacatcccagtggccatggagcaccagcctccatacattgttgcagtg
ttgccacgatacgtggagatccgaacactggaaccaaggcttctggtccaaagcattgag
ttgcaaaggcctcgcttcattacatcagggggatcaaacattatctatgtggccagcaat
cattttgtttggagactcattcctgtccccatggcaacccaaatccaacagcttctccag
gacaagcagtttgaattggctctgcagctcgcggagatgaaagatgactcagacagtgaa
aagcagcagcagatccatcacattaagaacttgtatgccttcaacctcttctgccagaag
cgctttgatgagtccatgcaggtctttgctaaacttggcacagatcccacccatgtgatg
ggcttgtaccccgacctactgcccacggactacaggaagcaactgcagtaccccaacccg
ctgcccacactctctggtgctgaactggagaaggctcacttagctctcattgactacctg
acacagaaacggagccagttggtaaagaagctgaatgactcggatcaccagtccagcacc
tccccgctcatggagggcactcccaccatcaagtccaagaagaagttacttcagatcatt
gacaccactctgctcaagtgctacctccatacaaatgtggccctggtggctcccttgctg
cgcctggagaacaaccactgtcatatcgaggagagtgagcatgtgctgaagaaggctcac
aagtacagcgagctgatcatcctgtatgagaagaaggggctccatgagaaagctctgcag
gtgctagtggaccagtccaagaaagcaaactcacctttgaaaggccacgagaggacggtg
cagtatctgcagcatttaggcacagaaaaccttcatctgattttttcctactcagtctgg
gtgctgagagacttcccagaagatggcctgaagatattcactgaagacctcccggaggta
gagtctctgccacgagatcgagtactcaacttcttgatagagaatttcaaggctctagcc
attccttatctggaacacatcatccacgtgtgggaggagacaggctcacagttccacaat
tgcctgatccagctgtactgtgagaaagtgcagagtctgatgaaagactaccttctgtcg
ctgcccacaggtaaaagtccagtccctgctggagaggaaggaggtgaactgggagaatac
cgacagaagctgctcatgttcttggagatttccagccactatgatccaggccggctcatc
tgtgattttccctttgatggcctcttagaagagcgagctctcctgttggggcgcatgggg
aagcacgaacaagctctcttcatctatgtccacgtcttgaaggacacaaagatggctaag
gagtactgccacaaacactacgaccaaaacaaagaaggcaacaaagatgtgtatctgtcc
ctgcttcggatgtacctgtcacctccaagcattcactgcctggggccaatcaaactggag
ctcctggagccacaggccaacctccaggctgccctgcaagtcctagagctgcactacagc
aaattagacaccaccaaggcaatcaaccttctgccagcaaacactcagatcaatgacata
cgcatctttctagaaaaggtcttagaagaaaatgcacaaaagaaacggttcaatcaagtg
cttaagaatcttctccatgcggagttcctcagggttcaggaagagcgaattttacaccag
caggtgaagtgcatcatcactgaggagaaggtgtgcatggtatgcaagaagaagattggg
aacagtgcatttgcaagataccccaatggggtggttgtgcactacttctgctccaaagag
gtaaactcagccgacacctga

  All links  
Gene (17)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (9)   
   UniProt (3)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (54)   
   RefSeq(nuc) (6)   
   GenBank (24)   
   EMBL (24)   
Protein domain (7)   
   Pfam (7)   
All databases (87)   

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