KEGG   Mus musculus (house mouse): 27404
Entry
27404             CDS       T01002                                 
Symbol
Abca8b, Abca8
Name
(RefSeq) ABC-type organic anion transporter ABCA8B isoform 1
  KO
K05650  ATP-binding cassette, subfamily A (ABC1), member 8
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu02010  ABC transporters
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    27404 (Abca8b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:mmu02000]
    27404 (Abca8b)
Transporters [BR:mmu02000]
 ABC transporters, eukaryotic type
  ABCA (ABC1) subfamily
   ABCA5, 6, 8, 9, 10 subgroups
    27404 (Abca8b)
SSDB
Motif
Pfam: ABC_tran ABC2_membrane_3 AAA_21 ACT_13 R1_ABCA1 RsgA_GTPase SMC_N AAA_29 AAA_15 AAA_22 MMR_HSR1 AAA_23 URGCP_GTPase Dynamin_N
Other DBs
NCBI-GeneID: 27404
NCBI-ProteinID: NP_001412409
MGI: 1351668
Ensembl: ENSMUSG00000020620
UniProt: Q8K440 A2AM56
Position
11:complement(109823016..109886642)
AA seq 1620 aa
MIKREISVRQQTCALLQKNLLKKWRLKRESLMEWVSSLLLLLFLYWYPHGHGATDLSSVP
TKDLGRVDSFRQSGFMIGYTPVTSMTQQIMEKVAATPFMADKKVLGLLDEENIKELTESH
AEIIRVIFSDTFSYHLKFQFDQRIPTSRELRDHNAHCDGLYEDVNCLIAIFWKEGFVALQ
AAINAAIIETTTNHSVMEELLSVSGKFMKIHPFVRQEGILTDFFIFTCIISFSPITYYVS
INVARERKRMKGLMMMMGLRDPAFWLSWGLLYAGFVFIMALSLALVIKSVQFFILTSFMV
VFSLFLLYGLSMITLAFLMSALVRKSVLTGLSVFLLTIFWGSLGFTSLYRYLPAPVEWTL
SLFSPFAFTLGMAQLLRVDYDLNSNAPPDPASGSNLIIATNFMLVFDAFLYLALMMYFEK
VLPNEYGHQHSPLFFLKSSFWLQTRKPAHVILEDGIDPVPSSGDSFEPVSPEFHGKESIR
IRNISKEYKGKPNKIEALKDLTLDIYEGQITAVLGHSGAGKSTLLNILSGLSVPTKGSVT
IYNNNLSEMADLENILRIAGVCPQANVQFDFLTVRENLRLFAKIRGIPPQDVEKEVQRVL
LELEMKNIQNILAQNLSGGQKRKLTFGIAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKE
RRADRVVLFSTQFMDEADILADRKVFISNGRLKCAGSSLFLKKKWGVGYHLSLQLKEVCV
PENITSLVKQHIPAAKLSAEGEGKLLYTLPLETTYRFPELCQSLDSCPGLGIENYGVSMT
TLNEVFLKLEGKASIDEPEVDIVGEGQTERSGDTERLMEMEQTLSSLRETEKTDGMALWR
QQTCAIAKVRLLKLKHERKTLLSVLLILVVGICPFLFENISTKIRQSSYTWELSPHDYFL
APGQQPQGMLTQLLIINKTEASIDDFIHSVERQNIALEVDASGTRDGTDDPSYNGALIVS
GNEKNHSFSFACNTKRLNCFPVLMDILSNGLLGMVKPSARIQTDRSTYLMDETIHPLEDL
WKTAFWLILTSACPPYIAMSSVTDYKNRAWFQLRVSGLFPSAYWVGQAMVDIPLYCFVFL
FMSLMDYLFRFPDTMFSIISHVIQIPCSVGYAISLIFLTYVISFISRKGKKNSGIWSLSF
YIITVFSVAVILLAFDVDGTQYYIIFLIPPSTLVGCLILSLHLFIGQIFEEGQVIEPFLV
FLIPFLHVFIFIFTLRCLEWKFGKKTMRKDPIFRISPRNNDVYQNPEEPEDEDEDVQMER
MRTANALVSTSFDEKPVIIASCLRKEYAGKQKHCLSKKKAKIATRNVSFCVRKGEILGLL
GHNGAGKSTSLKMISGDTKVTAGQVLLKGSREGDTPGFLGYCPQENALWPNLTVKEHLEI
FAAVRGLRKSHAAVAITRLADALKLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLD
EPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSI
QHLKSKFGKDYLLEMKVKTLEQVEPLNTEILRLFPQASRQERYSSLMAYKLPVEAVQPLS
QAFFKLEKVKQTFDLEEYSLSQSTLEQVFLELSKEQELDGLELEELDSSIKWKLLPQEEA
NT seq 4863 nt   +upstreamnt  +downstreamnt
atgatcaagagagagataagtgtgcgccaacaaacttgtgctttattacagaagaacctt
cttaagaaatggagactgaaaagggagtccttgatggagtgggtgagctccttgctcctt
ctgcttttcttgtattggtatccccatggtcatggagctactgacctgtcttcagtgccc
accaaggatctgggacgagtcgattctttcagacaatctgggttcatgatagggtacacg
cctgtcaccagcatgacacaacagataatggagaaggtagctgcaacccctttcatggca
gataaaaaagtcttgggactgttggatgaagaaaatatcaaggaattaacagaaagtcat
gcagaaataataagagtcattttttctgacacattctcataccatctgaaattccagttt
gatcagagaatcccaacgtcgagggaactcagagaccataatgctcattgtgatggactg
tatgaagatgtcaactgtctgatagccatattctggaaggaaggatttgtggctcttcaa
gctgccatcaatgctgccatcatagaaaccacaacaaaccattcagtgatggaggaactg
ctatcagtgtcagggaaattcatgaagatccatccttttgtccgtcaagaaggaattctg
actgatttctttattttcacctgcatcatttccttctccccaatcacctattatgtgtca
atcaatgttgcaagagagaggaaaaggatgaagggcttgatgatgatgatgggccttcga
gatccagcattctggctatcttggggtctgctctatgctggctttgtcttcattatggct
ctatccctggcacttgttatcaaatctgtccagttttttattctaaccagcttcatggtg
gtctttagcctcttcctcctttatggattatctatgatcactttggctttcctaatgagt
gccttggtgaggaagtctgtcctcactggcctgtctgtgtttcttctcaccatcttctgg
ggaagtctaggcttcacatccctgtacagatacctccctgcacctgtggaatggactctc
agtctctttagcccctttgccttcacactaggaatggcccagctcttacgtgtggattat
gatttaaattctaatgcaccccctgatccagccagtggctcaaatctgattatagcaacc
aatttcatgctggtatttgatgcgtttttgtatctggccctgatgatgtacttcgaaaaa
gttctgccaaatgaatacggacatcagcactctcccctgtttttcctgaaatcttcattt
tggctacaaacacgaaagcctgctcatgtgattcttgaagatggaatagaccccgttcct
tcatcaggtgactcgtttgaaccggtgtccccagaattccacgggaaagaatccatcaga
atcagaaatatttcaaaagaatacaaaggaaagcccaataaaatagaagccttaaaagac
ctgacgttggacatatatgaaggccaaatcacagcagtacttggtcacagtggagctggg
aaatcaacactgttaaatattcttagcggattatctgttcctactaaaggttctgtcacc
atctataataataacttatcagaaatggctgaccttgaaaacatcttgaggattgctgga
gtttgtccacaagccaatgttcaatttgacttccttactgtgagagaaaacctcaggctt
tttgctaaaataagaggaattccaccccaagatgtggagaaagaggtgcaaagggttttg
ctagaattggaaatgaaaaatatccaaaatatccttgctcaaaacctaagtgggggacag
aagagaaagctgacttttggaatcgccattttaggagattctcagattttcctactggat
gagcccaccgctggcctggatcccttttcaaggcaccgggtgtggaatctcctgaaggag
cgcagagcagaccgtgtggtcctcttcagcacgcagttcatggatgaggctgacatcctg
gctgataggaaagtgttcatctccaatgggaggctgaagtgtgcaggatcatcgctcttt
ctgaagaagaaatggggagttgggtatcacttaagtttgcagctgaaagaagtctgtgtt
ccagaaaacatcacatcgcttgttaaacagcacatccctgcagccaagctatcagctgaa
ggggaaggaaagcttctctatacattacccttagaaacaacttatagatttccagagctt
tgccagagtcttgacagctgtcctggactgggaattgaaaactatggtgtttccatgaca
actttgaatgaggtgttcctgaagctagaaggaaaagcatcaattgatgaaccagaggtt
gacatcgtgggagaaggacaaacagagagatctggggacacagaaaggcttatggagatg
gagcaaactctctcttcacttagggaaacagagaagacagacggcatggcactctggagg
cagcaaacctgtgcgatcgcaaaggttcgcctgttgaagttaaagcacgaaaggaaaaca
cttttatctgtgctcttgatactggtagtcggcatctgtccttttctttttgaaaatatc
tcaacgaaaatacgtcaaagctcttacacttgggaactttccccacacgattacttcctt
gctccgggacaacagccccagggcatgctcactcagttattgatcattaataagacagag
gcaagcattgacgactttatccattctgtggaacgccagaacatagctttggaagtcgat
gcttctggaaccagagatggtacagatgacccatcctacaatggagcccttatagtgtct
ggcaatgagaagaaccacagcttttcgtttgcatgcaacaccaagagactgaactgcttc
ccagttctgatggacatcctgagcaacgggctacttggaatggttaaaccgtcagcccgc
atccaaaccgacagaagcacatatctcatggatgaaactattcatcctttagaagaccta
tggaagactgcattctggctgattctgacctccgcttgccctccttatattgccatgagc
agtgtcacagattataagaacagagcttggttccagctgcgggtctccggcctcttccct
tcggcttactgggtcgggcaggcaatggtggacattcccctgtactgctttgtcttcctc
ttcatgtcgttaatggactacctttttcgcttcccagataccatgttttctattataagc
cacgtcatacaaatcccgtgttctgttggctatgccatatccctgatcttcttaacatac
gtgatttcgttcatttctcgcaaggggaaaaaaaacagcggcatttggtcacttagcttc
tatatcatcactgtgttctcagtggctgtaatattgctggcttttgatgtggatggtaca
cagtactacatcatctttttgataccaccgtccactctggttggatgcttgatcttgtct
ttgcatcttttcataggtcaaatctttgaagaaggacaagttatagagccattcctggta
ttcctcattcctttccttcatgttttcatttttatttttacccttcgatgtctggaatgg
aagtttggaaagaaaacaatgaggaaagatcccatctttagaatttctccaagaaacaat
gatgtgtatcaaaacccagaagagccagaagatgaggatgaagatgttcaaatggagaga
atgagaacagcgaatgccttggtatccaccagttttgatgagaagccagtcatcattgcc
agctgcctacgcaaagaatatgcagggaagcagaagcattgcctttccaagaagaaggcc
aagatagccactaggaatgtctcgttttgtgtcaggaaaggtgagattctaggattgttg
ggacacaatggagctggcaaaagtacatctcttaaaatgataagtggagacacaaaagtc
acagctgggcaggtgttactgaaagggagcagagaaggggacaccccggggttcctgggg
tactgtcctcaggagaatgctctgtggcccaacctcactgtgaaggagcacctggagata
tttgctgcagtgaggggcttgcgcaaaagtcacgctgcagtcgccatcacaaggttggca
gatgcgctcaagctgcaggaccagctgaagtctcctgtgaagacgctgtcagagggagtg
aagagaaagctgtgcttcgtgctgagcatcctggggaacccatctatattgcttctagat
gagccgtccactgggctggatcctgaggggcagcagcaaatatggcaagcaatcagggcc
atcataaaaaatacagacaggggtgccctgctgaccacccattacatggcagaggctgag
gctctgtgtgaccgagtggccatcctggtgtctggaaggctgaggtgtattggatccatc
caacatctcaaaagcaaatttggcaaagattacctgctggagatgaaggtgaagaccctc
gagcaggtggagcccctcaatacggagatcctcaggctttttccccaggcttctaggcag
gaacggtactcttctctgatggcttacaaattaccagtggaagctgtacagcctttatcc
caagctttcttcaagttagagaaagttaagcagacctttgacctggaggagtacagcctc
tctcagtctaccctggagcaggtcttcctagagctctccaaggagcaggagctggatggc
cttgaattagaagaattagactcctccataaagtggaagctcctcccacaggaagaggct
taa

  All links  
Gene (49)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (11)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (24)   
   RefSeq(nuc) (8)   
   GenBank (8)   
   EMBL (8)   
Protein domain (14)   
   Pfam (14)   
All databases (98)   

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