KEGG   Mus musculus (house mouse): 30841
Entry
30841             CDS       T01002                                 
Symbol
Kdm2b, Cxxc2, Fbl10, Fbxl10, Jhdm1b, PCCX2
Name
(RefSeq) lysine (K)-specific demethylase 2B
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    30841 (Kdm2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mmu03000]
    30841 (Kdm2b)
   04121 Ubiquitin system [BR:mmu04121]
    30841 (Kdm2b)
   03036 Chromosome and associated proteins [BR:mmu03036]
    30841 (Kdm2b)
Enzymes [BR:mmu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     30841 (Kdm2b)
Transcription factors [BR:mmu03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    30841 (Kdm2b)
Ubiquitin system [BR:mmu04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     30841 (Kdm2b)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    30841 (Kdm2b)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     30841 (Kdm2b)
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box JHD Cupin_8 JmjC
Other DBs
NCBI-GeneID: 30841
NCBI-ProteinID: NP_001003953
MGI: 1354737
Ensembl: ENSMUSG00000029475
UniProt: Q6P1G2
Position
5:complement(123008727..123127333)
AA seq 1309 aa
MEAEKDSGRRLRAIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLVFRDKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNALAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRELMLI
DAPRKTSVDGFSSDSWLDMEEESCEQQPQEEEEEEEDKEEEGDGADKTPKPPTDDPTSPT
STPPEDQDSTGKKPKAPAIRFLKRTLSNESEESVKSTSMPTDDPKTPTGSPATEVSTKWT
HLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHVDDDPTLAITGV
PVVSWPKKTAKNRVVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGEC
HFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLME
CSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSL
LKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPADGILRRKSDDVHLRRKRKYE
KPQELSGRKRASSLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRK
KRRSWKNAEDRLSLANKPLRRFKQEPEDDLPEAPPKTRESDQSRSSSPTAGPSTEGAEGP
EEKKKVKMRRKRRLVNKELSKELSKELNHEIQKTESTLAHESQQPIKSEPESENDEPKRP
LSHCERPHRFSKGLNGTPRELRHSLGPGLRSPPRVMSRPPPSASPPKCIQMERHVIRPPP
ISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHRDLCVCMRVCRTWNRWCCDKRLWTRIDL
NRCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSAL
CSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITD
VSLRLIIRHMPLLSKLQLSYCNHINDQSINLLTAVGTTTRDSLTEVNLSDCNKVTDLCLS
FFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq 3930 nt   +upstreamnt  +downstreamnt
atggaggcagagaaagactctggaagaagattgcgtgcgattgaccgccagagatacgac
gagaacgaagacttgtcggacgtggaggaaattgtcagcgtccgtggcttcagcctggag
gagaagctacgtagccagttataccagggggacttcgtgcatgctatggaaggcaaagat
tttaactatgagtacgtacagagagaagctctcagggtccccctggtttttcgggacaag
gatggactagggatcaagatgccagaccctgatttcacagtccgagacgtcaaactcctg
gtggggagccgccgtttggtggatgtcatggacgtcaacacccagaagggtaccgagatg
agcatgtcccagtttgtgcgctactacgagacaccagaggcacagcgggataaactgtac
aacgtcatcagcctcgagttcagccatacgaagctggagcatctggtcaagcgtcccact
gtggtggacctggtcgactgggtggacaacatgtggcctcagcatctaaaggaaaagcag
acagaagccaccaatgcccttgcagagatgaagtaccccaaagtgaaaaagtactgtctg
atgagcgtgaagggctgtttcactgacttccacattgactttggaggcacctccgtgtgg
taccatgtgttccgtggtggcaagatcttttggctgatccctccaaccctgcacaacttg
gctttgtacgaggagtgggtgctgtctggcaaacagagcgacatctttctgggagaccgc
gtggaacgctgccaaagaattgagctgaagcaaggctacacctttttcatcccttccggt
tggatccatgcggtttatacgcctgtggactctctggtgttcggcgggaacatcctgcat
agcttcaacgtgcccatgcagctgcggatctacgagatcgaggacaggacccgggttcag
cccaagttccgttaccccttctactatgagatgtgctggtatgtcttggagagatatgtg
tactgtgtgacccagcgctcctacctcactcaggaataccagagagaattaatgcttatt
gatgccccaagaaaaaccagtgtagacggcttttcatccgactcctggctggacatggag
gaggagtcctgcgagcagcagccacaggaggaagaggaggaggaggaggacaaggaggag
gaaggagatggtgcagataaaacacccaagccacccaccgatgaccccacctcacccacc
agcaccccgcccgaagaccaggacagcacagggaagaagcctaaagcccctgccatacgg
ttcctcaagaggacgttgtccaatgagtcagaggaaagtgtcaagtcgacctcgatgccc
acggacgatcccaagacgcccacgggctccccggccaccgaggtttctaccaagtggact
caccttaccgaatttgaactgaagggcttgaaagccctggttgaaaagctagagtccctt
ccggagaataagaagtgtgtccctgagggaatcgaggacccccaggccctcctggaaggt
gtaaagaatgtactgaaagagcacgtggatgacgaccccaccctggccatcaccggggtc
cctgtggtcagctggccaaagaaaactgcaaagaaccgggtggtgggtcggcctaagggc
aagttgggcccggcctcagcggtgaagttggctgccaaccgaacaacagcaggagctcgc
aggcgccggacgcgatgccgcaagtgcgaggcctgcctgcggacggagtgtggagagtgc
cacttttgcaaggacatgaagaagtttggaggtcctgggcgcatgaagcagagctgcatc
atgcggcagtgcatcgcgccagtgctgccccacaccgccgtgtgccttgtgtgtggcgag
gcagggaaggaggacacagtggaagaggaagaaggcaagtttaacctcatgctcatggaa
tgctccatctgcaacgagatcatccaccctggatgccttaagattaaggaatcggagggt
gtggtcaacgatgagcttcccaactgctgggagtgtccgaagtgtaaccatgccggcaag
accgggaaacaaaagcgtggccctggctttaagtatgcctccaacctgcctggctccttg
ctcaaggagcagaagatgaaccgggacaacaaggaagggcaagagcctgccaagcggaga
agtgagtgtgaagaggctccccgtcggaggtcagacgagcaccccaaaaaggtgcctgca
gatggcatcctccgccgaaagtctgatgatgtgcacctgaggaggaagcggaaatacgag
aagccccaagagctgagtggacgcaagcgagcctcgtcgcttcaaacgtcccccggttcc
tcctctcacctctcgccgaggccccctctaggcagcagtctcagcccttggtggagatcc
agtctcacttacttccagcagcagctaaaacctggcaaagaagataagcttttcaggaaa
aagcggcggtcctggaagaacgctgaggatcgtctgtcactggccaacaagccccttcgg
cgctttaagcaggaaccggaggacgatctgcctgaggcacctcctaagacccgggagagt
gatcagtcacgttccagctcacccactgctggtcccagcactgagggagctgaaggccca
gaagagaagaaaaaggtgaagatgcgccggaagcggcgacttgttaacaaggagctgagc
aaagagctaagcaaggagctcaaccatgagatccaaaagacggagagcaccctggctcac
gagagccagcagcccatcaagtcagagcctgagagcgagaacgacgagcccaagaggccc
ttaagccactgcgagcgcccccaccgcttcagcaaagggctcaacggcacacctcgggag
ctgcggcactcgctgggacctggcctgcgtagtccacctcgtgttatgtcccggcccccg
ccctctgcatccccacccaagtgcatccagatggagcgtcacgtgatccggccaccgccc
atcagccccccacctgactcgctgcccctggatgatggagcagcccacgtcatgcatagg
gaggtgtggatggcagtcttcagctacctcagccaccgagacctgtgtgtctgcatgcgg
gtctgcaggacctggaaccgctggtgctgcgataagcggttgtggacccgcatcgacctg
aaccgctgcaagtccatcacacccctgatgctgagcggtatcatccggcgacagcctgtc
tcccttgacctcagttggaccaacatctccaagaagcagctgagttggctcatcaaccgg
ttgcctgggctccgagacttggtgctgtcaggctgctcatggatcgctgtctcagccctc
tgtagctccagttgtccattgctccggaccctggatgtccagtgggtagaaggactaaag
gatgcccagatgagggatctcctgtctccacccacagacaacaggccaggtcagatggac
aatcggagcaagctccggaacattgtagagctgcgcctagctggcctggacatcacagat
gtctccctgcggctcattattcgccatatgcccctgctctcgaagctccaactcagttac
tgtaaccacatcaatgaccagtccatcaacctgctcactgccgtcggcaccaccacccga
gactcgctgacagaggtcaacctatcagactgtaataaggtaactgacctgtgcctgtcc
ttcttcaaacgctgtggaaatatctgtcatattgacctgaggtactgcaagcaagtcacc
aaggaaggctgtgagcaattcatagctgaaatgtctgtgagtgtccaatttgggcaagtg
gaagagaaactcctgcaaaaactaagttag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (20)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (18)   
DNA sequence (51)   
   RefSeq(nuc) (19)   
   GenBank (16)   
   EMBL (16)   
Protein domain (7)   
   Pfam (7)   
All databases (140)   

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