KEGG   Mus musculus (house mouse): 326622
Entry
326622            CDS       T01002                                 
Symbol
Upf2
Name
(RefSeq) UPF2 regulator of nonsense transcripts homolog (yeast)
  KO
K14327  regulator of nonsense transcripts 2
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    326622 (Upf2)
   03015 mRNA surveillance pathway
    326622 (Upf2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    326622 (Upf2)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     326622 (Upf2)
   mRNA cycle factors
    P-body specific factors
     326622 (Upf2)
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 326622
NCBI-ProteinID: NP_001074601
MGI: 2449307
Ensembl: ENSMUSG00000043241
UniProt: A2AT37
Position
2:5956218..6061514
AA seq 1269 aa
MPAERKKSASMEEKESLLNNKEKDCSERRPVSSKEKPRDDLKVTAKKEVSKVPEDKKKRL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKQEEEERKKQEEQAKRQQEEAAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKLSDVNCAAHLCSLFHQRYSDFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKSIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSQNKDSNKDDSKEAKEPKDNKEASSPDDLELELENLEINDDTLELEGADEAED
LTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRK
KLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIET
KNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHL
RTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVRKKRPPLQEYVRKLLYKD
LSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVN
PDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVW
TKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKESKDS
MTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSEEEEEGEEEEEENTDYLTDSN
KENETDEENAEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIP
LHLKSQLRKGPPLGGGEGETESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQ
AEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADL
IFKTGGRRR
NT seq 3810 nt   +upstreamnt  +downstreamnt
atgccagctgagcgtaaaaagtcagcaagtatggaagaaaaagaatctttactaaacaac
aaggaaaaagactgcagtgagaggcggccagtgagcagcaaggagaaaccaagggacgac
ctcaaggtcactgccaagaaggaggtcagtaaggtcccagaagacaaaaagaagagactg
gaagaagataagagaaaaaaggaagacaaggaacgcaagaaaaaagaggaagagaaggtg
aaggcagaggaagagttaaagaagaaggaagaggaagaaaagaagaaacaggaagaggaa
gagaggaaaaagcaggaggagcaggccaagcggcagcaggaagaagcggctgctcagctg
aaagagaaagaagaatctcttcagcttcatcaggaggcctgggaacgccatcaattacga
aaggaacttcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaatttcttt
agccgcctagattcgagcttaaagaaaaataccgcttttgtcaagaaactaaaaacaatt
acagaacaacagagagactccttgtctcatgattttaatggcctgaatttaagcaaatat
attgcagaagccgtagcttccattgtggaggcaaaattaaaactctctgacgtgaactgt
gctgcgcacctctgctctctctttcaccagcggtactctgactttgcgccctctcttctt
caggtgtggaaaaaacatttcgaagcgaggaaagaggagaaaacgcctaacattaccaag
ctaagaactgacttgcgtttcattgcagaattgacaatagtgggaattttcactgacaag
gaaggtctttccttaatctacgaacagctaaaaagtattattaatgctgatcgagaatcc
cacactcatgtttctgtggtgattagtttctgtcgccattgtggagatgacattgctgga
cttgtaccgaggaaagtaaaaagtgctgcggagaagtttaatttgagttttcctcctagt
gagatcattagtccggagaagcagcagcctttccagaatcttttaaaagagtactttacg
tctttgaccaaacacctgaaaagggaccacagggagctgcagaacactgagaggcaaaac
aggcgtattctgcactctaaaggcgagctaagtgaggacaggcacaagcaatatgaggag
tttgcaatgtcttaccagaagctgctggcgaactctcagtccttagcggaccttttggat
gaaaatatgcccgatcttcctcaggacaaacccacaccagaagagcatgggcccggaatc
gacatatttacacccggcaaacctggagagtatgacttagaaggtggcatttgggaagat
gaagacgctcggaatttttatgaaaacctcatcgatttgaaagcatttgttccagccatc
ttgttcaaagacaatgaaaaaagtcagaacaaagattctaacaaagatgattccaaagag
gcaaaagaaccaaaggataataaggaggcatcaagtcctgatgatttggaacttgagttg
gagaatttagaaattaatgatgatacattggagttagaaggtgcagatgaagctgaagat
cttacaaagaaacttcttgatgaacaagaacaagaagatgaagaagccagcactggatct
catctcaaactcatagtagatgctttcctccagcagctgcccaactgtgtcaaccgagac
ctaatcgacaaggcagccatggatttttgcatgaacatgaacacaaaggcaaacaggaag
aagttggtgcgggcactcttcatagttcctaggcagaggttggatttgctaccattttat
gcaagattggttgctaccttgcacccctgcatgtctgatgtagcagaggatctttgttcc
atgctgaggggggatttcagatttcatgttcgaaaaaaggaccagatcaacattgaaaca
aagaacaaaactgtccgctttattggagagctaaccaagtttaagatgttcaccaaaaat
gatacactgcattgtctaaagatgcttctgtcagatttctctcatcatcatattgaaatg
gcatgcactctactggagacctgcggaagatttctcttcagatctccagaatcacacctg
aggaccagtgtgcttttggagcaaatgatgagaaagaaacaagcaatgcatcttgatgca
cgatatgttacaatggtagaaaatgcatattattactgcaacccaccgcccgccgaaaag
accgtgagaaagaaacgccctcctcttcaggagtatgtccgcaagcttctgtacaaggat
ctctctaaggtcacgacggaaaaggttttgagacagatgcgaaagttgccctggcaggac
caagaagtaaaagactatgttatttgttgtatgataaacatctggaacgtgaaatacaac
agtattcactgtgtagccaacctcctagcagggctagttctctaccaggaggatgttggg
atccatgttgtggatggcgtactcgaagatattcgattgggaatggaggttaatcaacct
aaatttaaccagaggcgtatcagtagtgccaagttcttaggagaactttataattacaga
atggtcgaatcagctgttattttcagaactctttattcttttacttcatttggtgtcaac
cctgatgggtctccaagttccctggaccctcctgagcatctctttagaattagactagta
tgcactattttggatacctgtggccagtactttgacagaggttccagtaaacgaaaactt
gactgcttccttgtatattttcagcgttatgtttggtggaagaaaagtttggaggtttgg
acaaaagaccatccatttcctattgatatagattacatgatcagtgatacactagaactg
ctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacaagac
ttggaacgagaattcttaataaaactaggcctagtaaatgacaaagagtccaaagattct
atgacagaaggggaaaatcttgaagaggatgaagaagaagaagaaggaggagctgagaca
gaggaacagtctggaaatgaaagtgaagtgaacgagccagaagaagaagagggttctgag
gaggaggaggagggagaggaggaggaagaggagaatacagattacctcacagattccaac
aaggagaacgagactgatgaagaaaatgctgaggtgatgattaagggaggcggactgaag
catgttccttgtgtagaagatgaggacttcattcaagctctggacaaaatgatgctagaa
aaccttcagcagcgaagtggtgagtctgttaaagtgcaccagcttgatgttgctatccct
ttgcatctcaaaagccagctgaggaaagggcccccgcttggcggtggggaaggagagacg
gagtctgcagacacgatgccatttgtcatgttaacaagaaaaggcaataaacagcagttt
aagattctcaatgtgcccatgtcatcccaacttgctgcaaatcattggaaccagcaacaa
gcagaacaagaggagaggatgaggatgaaaaagctcaccttagacatcaatgaacgacaa
gagcaagaagattatcaagaaatgttgcagtctcttgcacagcgcccagctccagcaaac
actaatcgtgagcggcggcctcgttaccagcatccaaagggagcacctaatgcagatcta
atctttaagactggtgggaggagacgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (18)   
   RefSeq(nuc) (6)   
   GenBank (6)   
   EMBL (6)   
Protein domain (2)   
   Pfam (2)   
All databases (70)   

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