KEGG   Mus musculus (house mouse): 432508
Entry
432508            CDS       T01002                                 
Symbol
Cpsf6, 4733401N12Rik, CFIM, CFIM68, HPBRII-4, HPBRII-7
Name
(RefSeq) cleavage and polyadenylation specific factor 6
  KO
K14398  cleavage and polyadenylation specificity factor subunit 6/7
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03015  mRNA surveillance pathway
mmu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    432508 (Cpsf6)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    432508 (Cpsf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    432508 (Cpsf6)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     432508 (Cpsf6)
SSDB
Motif
Pfam: RRM_1 PRP38_assoc
Other DBs
NCBI-GeneID: 432508
NCBI-ProteinID: NP_001013409
MGI: 1913948
Ensembl: ENSMUSG00000055531
UniProt: Q6NVF9
Position
10:complement(117180572..117212903)
AA seq 551 aa
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQSPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGGSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNR
NRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGI
ESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDR
ERDREREYRHR
NT seq 1656 nt   +upstreamnt  +downstreamnt
atggcggacggtgtggaccacatagacatttacgcggatgtgggtgaagagttcaaccag
gaagcagaatatggtggacatgatcagatagatttgtatgatgatgtcatctctccatct
gcaaataatggcgatgccccagaagatcgcgactacatggatactcttccaccaactgtt
ggtgatgatgtgggtaaaggagccgcaccaaacgttgtgtacacttacactgggaagaga
atcgcattgtatattggaaatctaacatggtggacaacagatgaggacctaactgaggcc
gttcattctttgggagtaaatgatattttggagataaaattctttgaaaatcgggcaaat
ggacaatcaaagggatttgcccttgttggtgttggatctgaagcatcttccaaaaagtta
atggatcttttgcctaaaagagaacttcatggtcagagtcctgttgtaactccatgcaat
aagcagttcctgagtcaatttgaaatgcaatccaggaaaactacacagtcaggacagatg
tctggggaagggaaagccggtcctccaggaggcggttcacgcgcagcgtttcctcaaggt
ggtagaggacggggccggtttccaggggctgttcctggtggggacagatttcctgggcca
gcaggaccaggagggccacctccaccttttccagctggacaaactccaccacgtccacct
ttaggcccacctggcccacctggtccaccaggtcctccacctcctggtcaggttctgcca
cctcctctagcaggacctcctaaccgaggagaccgccctccaccaccagttctttttcct
ggacaaccttttgggcagcctccgctgggtccacttcctcctgggcctccacctccagtt
ccaggctacggcccccctccaggtccaccgcctccacagcagggaccacctccacctcca
ggcccctttccacctcgcccaccaggtccactagggcctcccctcacacttgctcctcct
ccacatcttccgggaccacctccaggtgccccgccaccagctccacatgtgaatcctgct
ttttttcctccaccaactaatagtggcatgccaacatcagatagtcgaggtccaccacca
acagacccatatggccgacctcccccatatgataggggtgactacggtccccctgggagg
gaaatggatactgcaagaacacctctgagtgaagctgagtttgaagaaatcatgaataga
aatcgggcaatctcaagcagtgctatttcaagagctgtgtctgacgctagtgctggtgat
tatgggagtgctattgaaacattggtaacagcaatttctttaattaaacaatccaaagtc
tctgcagatgatcgttgcaaagttcttattagctctctgcaggattgccttcatggaatc
gagtccaagtcctatgggtctggatccagacgtgaacgatcaagagaacgggaccatagt
agatcacgggaaaagagtcgtcgccataaatctcggagtagagatcgccacgatgactat
tacagagagagaagcagagaacgagagagacaccgggatcgggaccgcgaccgtgaccga
gagcgtgaccgagagcgagaataccgtcatcgttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (67)   
   RefSeq(nuc) (15)   
   GenBank (26)   
   EMBL (26)   
Protein domain (2)   
   Pfam (2)   
All databases (109)   

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