KEGG   Mus musculus (house mouse): 67465
Entry
67465             CDS       T01002                                 
Symbol
Sf3a1, 1200014H24Rik, 5930416L09Rik
Name
(RefSeq) splicing factor 3a, subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    67465 (Sf3a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mmu03041]
    67465 (Sf3a1)
Spliceosome [BR:mmu03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    67465 (Sf3a1)
 Complex B
    67465 (Sf3a1)
 Complex C
   U2 SnRNP specific factors
    67465 (Sf3a1)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Ubiquitin_2 Rad60-SLD
Other DBs
NCBI-GeneID: 67465
NCBI-ProteinID: NP_080451
MGI: 1914715
Ensembl: ENSMUSG00000002129
UniProt: Q8K4Z5 Q3TVM1
Structure
Position
11:4110354..4132541
AA seq 791 aa
MQAGPVQAVPPPPPVATESKQPIEEEASSKEDPTPSKPVVGIIYPPPEVRNIVDKTASFV
ARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQ
QQATQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQ
FLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVL
DQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTT
PEELGARILIQERYEKFGESEEVEMEVESDEEDQEKAEETPSQLDQDTQVQDMDEGSDDE
EEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPA
SKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEET
AIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTK
EKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPAMPPPVRTTVVSAVPVMPRPPM
ASVVRLPPGSVIAPMPPIIHAPRINVVPMPPAAPPIMAPRPPPMIVPTAFVPAPPVAPVP
APAPMPPVHPPPPMEDEPPSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKL
NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH
LALKERGGRKK
NT seq 2376 nt   +upstreamnt  +downstreamnt
atgcaggccggacccgtgcaggcggtacccccgccgccgccagtagccactgagtccaaa
cagccaattgaagaagaagcatcgtcaaaggaggatcccaccccttccaagccagtggtc
ggcattatttaccctcccccggaggtcaggaacatcgtcgacaagactgccagttttgtg
gccagaaatgggcctgaatttgaagctaggattcgacagaatgagatcaacaaccccaag
ttcaatttcttaaatcccaatgacccttaccatgcctactaccgccacaaggtcagcgag
ttcaaggaggggaaggctcaggagccctcagctgccatccccaaggttatgcagcagcag
cagcaagctacgcaacagcagctgccccagaaggtccaagcccaggtgatccaagagacc
atagtaccgaaggagccccctcctgagtttgagttcatcgctgatcccccctccatctca
gccttcgacctggatgtagtgaagctgacagctcagtttgtggccaggaatgggcgtcag
tttctgacccagctgatgcagaaagagcagcgcaactaccagtttgactttctccgaccc
cagcacagcctcttcaactacttcacaaagctggtggagcagtataccaagatcttgatt
ccacccaaaggcttattttcaaagctcaagaaagaggctgaaaatcctcgagaagttttg
gaccaggtttgttaccgagtagaatgggccaaatttcaggaacgtgagaggaagaaggaa
gaagaggagaaagagaaggagcgagtagcttatgctcagattgactggcatgattttgtg
gtggtggagacagtggattttcaacccaatgagcaaggaaactttccacccccaacaaca
ccagaggaactgggagctcggatcctcattcaggagcgctacgagaagtttggggagagc
gaggaagtggagatggaggttgagtcagatgaggaagatcaggagaaggccgaggagact
ccttcccagctggaccaggatactcaagtacaggacatggatgagggttcagatgatgaa
gaagaagggcagaaagtgcctccacccccagagacacccatgcctccacctctgccccca
acaccagaccaagtcattgtgcggaaggactatgatcccaaagcttccaagcccctccct
ccagcccctgctcccgatgagtatcttgtatcccccatcactggggagaagattcctgcc
agcaaaatgcaggagcacatgcgcattgggcttcttgacccccgctggctggagcagcgg
gaccgctccatccgagagaagcagagtgatgatgaggtttatgcaccaggtctggatatt
gagagcagcttaaagcagttggctgagcgacgtactgacatctttggggtagaagagaca
gccattggtaagaagattggtgaagaggagatccagaagccagaggagaaggtgacttgg
gatggccattcaggcagcatggcccggacccagcaggctgcccaggccaacatcaccctc
caggagcagattgaggccatccataaggccaagggcctggtgccggaagatgacactaag
gagaagattggccccagcaagcccaatgaaatccctcagcagccaccacctccatcttca
gccaccaatatccccagctcagcaccccccattacatcagtgccccggccacctgcgatg
ccacctccagtccgcaccactgttgtatctgcagtacctgtcatgcctcggccacccatg
gcatctgtggtccggctgcccccaggctcagtgattgcccccatgccacccatcatccac
gcacccaggatcaatgtggtacctatgcctcctgcagcacctcccatcatggcgccccgc
ccacctcccatgattgtgccaacagcctttgtgcctgccccacctgtggctccagtccca
gccccagctccaatgcctcctgtacaccccccacctcctatggaggatgagcctccatcc
aagaaactaaagaccgaggacagtctcatgcctgaggaagaattcctgcgcaggaacaag
ggtccagtatccatcaaagtgcaggtacccaacatgcaggataagacggaatggaagctg
aatggtcaggggctggtcttcactctcccactcacagaccaggtctctgtcatcaaagtg
aagattcatgaagccacgggcatgcctgcggggaaacagaaactacagtatgaaggcatc
ttcatcaaggattccaactccctggcttactacaacatggccagtggtgctgtcatccac
ttggccctcaaggagagaggcggcaggaagaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (71)   
   RefSeq(nuc) (1)   
   GenBank (35)   
   EMBL (35)   
3D Structure (1)   
   PDB (1)   
Protein domain (5)   
   Pfam (5)   
All databases (134)   

Download RDF
DBGET integrated database retrieval system