KEGG   Mus musculus (house mouse): 68879
Entry
68879             CDS       T01002                                 
Symbol
Prpf6, 1190003A07Rik, 2610031L17Rik, ANT-1, U5-102K
Name
(RefSeq) pre-mRNA-processing factor 6
  KO
K12855  pre-mRNA-processing factor 6
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    68879 (Prpf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mmu03041]
    68879 (Prpf6)
Spliceosome [BR:mmu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    68879 (Prpf6)
 Complex C
   U5 SnRNP specific factors
    68879 (Prpf6)
SSDB
Motif
Pfam: PRP6_TPR PRP1_N TPR_14 TPR_19 HAT_PRP39_N TPR_16 HAT_PRP39_C Suf HAT_Syf1_CNRKL1_C HAT_Syf1_CNRKL1_N TPR_17 FAT ARM_TT21_2nd ARM_TT21_C
Other DBs
NCBI-GeneID: 68879
NCBI-ProteinID: NP_598462
MGI: 1922946
Ensembl: ENSMUSG00000002455
UniProt: Q91YR7
Structure
Position
2:181243112..181297454
AA seq 941 aa
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEE
QGELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCAVSKDITNWQRKIGEILVLVAARIKNTF
NT seq 2826 nt   +upstreamnt  +downstreamnt
atgaacaagaagaagaagccgttcctgggcatgcctgcgccgctgggctacgtacccggg
ctgggcaggggtgccactggcttcaccacccgatcagacatcgggcctgctcgggatgca
aatgatcctgtggatgatcgccatgccccaccagggaagagaactgtgggggaccagatg
aagaaaaatcaggcggctgatgatgatgatgaagatctgaatgataccaactacgatgag
tttaatggctatgctgggagcctcttctcaagtgggccctatgaaaaagatgatgaggaa
gcagatgctatttatgcagctctggataaaaggatggatgagagaagaaaagagagaaga
gagcaaagggagaaagaagagattgagaaataccgaatggaacgtcccaaaatccagcag
caattttcagaccttaagaggaagctggcagaagtcacagaagaagagtggctgagcatc
ccagaagttggcgatgccagaaacaaacgtcaacggaacccacgttatgagaagctgact
cctgttcctgatagtttctttgccaaacatttacagactggagagaaccatacttctgtg
gatccccgacagactcaatttggaggtctgaacacaccctacccgggaggcctgaacact
ccatacccaggtggaatgacacctggattgatgacacctggtacaggggagctggacatg
aggaagattggccaggcaaggaataccctgatggacatgaggcttagccaggtatctgac
tcagtgagtgggcagactgttgtggaccccaaaggctacctgacagatctaaattccatg
atcccaacccatggcggggacataaatgacatcaagaaagcacgactacttctcaaatct
gttcgagaaacaaaccctcatcacccaccagcttggattgcatcagctcgcctggaagaa
gtcactggaaagttacaagtagctcgaaaccttattatgaaagggacagagatgtgcccc
aagagtgaagatgtctggctagaagcagctaggttacagcctggggacacagccaaggct
gtggtggcacaagctgtccgtcatctcccgcagtctgttaggatttacatcagagcagca
gagctagaaacagacattcgagcaaagaagcgtgttcttcggaaagcacttgagcatgtt
ccaaactctgttcgattgtggaaagcagctgttgagcttgaagagcctgaagatgctaga
atcatgctgagccgagcagtagagtgctgtcccaccagtgtagagctatggcttgctttg
gcaagactagaaacttatgaaaatgctcgcaaggtcttaaataaagcacgtgagaacatt
cctacagatcggcacatctggatcacagctgccaaactggaggaggccaatgggaacact
cagatggtggaaaagatcattgaccgagccatcacctccctacgggccaatggtgtagag
atcaaccgcgaacagtggatccaggatgctgaggagtgtgacagggcagggagtgtggcc
acgtgccaggctgtcatgcgtgctgtaatcggtattgggattgaggaggaagatcgcaaa
cacacctggatggaagacgctgacagttgtgtggcccacaatgccctggagtgtgcacga
gccatatatgcctatgccctacaagtcttccccagcaagaaaagtgtgtggttacgagct
gcctactttgagaagaatcatggtaccagggagtctctggaagcactcttgcagagggct
gtagcccactgccccaaggcagaggtgctatggctcatgggtgccaagtcaaagtggctg
gcaggggatgtacctgcagcaaggagcatcctggccctggcctttcaggccaaccccaac
agcgaagagatctggttggcggctgtgaagctggagtcagagaacaatgaatacgagcga
gcccggaggctactggccaaggctcggagcagcgcacccactgcccgtgtattcatgaag
tctgtgaagctggagtgggttctggggaacatctctgcggcgcaggagctgtgtgaggag
gctctgaggcactatgaagatttccccaagctgtggatgatgaaggggcagattgaggag
cagggagaactgatggagaaggcccgggaggcctacaaccaggggctgaagaaatgtcct
cattccacaccgctttggctcttgctttcccgactagaggaaaagattgggcagctgaca
cgtgctcgggccattttagagaaatctcgtctgaaaaacccaaagaaccctgggctatgg
ttggagtcagtgcggctggagtaccgggcagggctgaagaacattgccaataccctcatg
gccaaggcgctgcaggagtgccctaactctggtatcctgtggtctgaagctgtcttcctt
gaggcaaggccccagagaaagaccaagagtgtggatgccctgaagaagtgtgaacatgac
ccccatgtgcttttagctgtggctaagttgttctggagtgaaagaaagatcaccaaggct
cgggagtggttccatcgcactgtgaagattgactcagatctgggggatgcctgggccttc
ttctacaaatttgaactgcagcatggaactgaggagcaacaggaggaggtgaggaaacgc
tgtgagaatgcagagccccgacatggagagctgtggtgtgctgtgtccaaggatatcacc
aactggcagaggaagattggggaaatcctagtcctggtggccgcccgcatcaaaaatacc
ttctga

  All links  
Gene (27)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (41)   
   RefSeq(nuc) (1)   
   GenBank (20)   
   EMBL (20)   
3D Structure (1)   
   PDB (1)   
Protein domain (14)   
   Pfam (14)   
All databases (86)   

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