KEGG   Mus musculus (house mouse): 69956
Entry
69956             CDS       T01002                                 
Symbol
Ptcd3, 2610034F17Rik, 2810422B04Rik, MRP-S39
Name
(RefSeq) small ribosomal subunit protein mS39 isoform 1 precursor
  KO
K17659  pentatricopeptide repeat domain-containing protein 3
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03029 Mitochondrial biogenesis [BR:mmu03029]
    69956 (Ptcd3)
Mitochondrial biogenesis [BR:mmu03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    69956 (Ptcd3)
SSDB
Motif
Pfam: Rib_mS39_PPR PPR_2 PPR_3 MSC6_N PPR_long TPR_24 RPM2 7TM_GPCR_Sra
Other DBs
NCBI-GeneID: 69956
NCBI-ProteinID: NP_081551
MGI: 1917206
Ensembl: ENSMUSG00000063884
UniProt: Q14C51
Structure
Position
6:complement(71857622..71886080)
AA seq 685 aa
MAAAAVAARRLSFRSGLVLLQTTRGTGVCEPKVCCRFYAGTESLPKVEGSDITGIEEIVI
PKKKTWDKVAVLQALASTVNRDPTAAPYVFHDDPYLIPTSALESRSFLLAKKSGETAAKF
IINSYPKYFQKDIAEPHIPCLMPEYFEPQIEDVSEAALEERIRLRKVRASVDMFDQLLQA
GTTVSLETTNSLLDLLCYYGDQEPPADYPFQQTEHLENLEEAAEENNQTSKMESGPWKAQ
NNAERIFALMPEKNARSYCTMIRGMVKHRAYAQALNVYTELLNNRLSADVYTFNALIEAK
TFILNEKFEEKWNDILDLLKHMVAQKVKPNLQTFNTILKGLRKCYSLGRIPALQILREMK
HIGIEPSLATYHHIIHLFYPRDLSAIKMPSLIIYDIMNELEGRTFSPQDLDDGRFFQLAM
SVCSSLRDLELAYQVHRLLNTGDNRKLVGHDPLRKVYYSKFFSLICSLEQIDVTLKWYKD
LIPSVFLPHYQIFIGLLQALDVANRLELVPQIWKDSKEYSHTFRDALREEVLMLMARDKH
PPELQVAFADCAADIKSTYEDQSARQPAFDWPANPLQYIAVLFLRGGRSQEAWKMLELFK
KHKKIPRNELLEEFMDTAKASGSTALAIEVVKLASAFSLPIGESLAQRVVMDFTVDPEQK
EALGNLTELNSSDGESSSDSDSDDK
NT seq 2058 nt   +upstreamnt  +downstreamnt
atggcggcggcggcggttgcagctcgccgcctgtcctttcgcagcgggcttgtcttgctg
cagaccactcgggggacgggtgtgtgtgaaccgaaggtctgttgcagattttatgctgga
actgaatccctcccaaaggttgaaggatcagatataacagggattgaagaaatagtcatt
ccaaaaaagaaaacatgggataaagtggctgttcttcaggcacttgcatccacagtaaac
agggatcctacagctgcaccttatgtatttcacgatgatccttacctcataccaacctct
gctctggagtctcgttcatttttattggcaaagaagtctggagagactgcagcaaagttt
attattaattcatatcccaaatatttccaaaaggatatagctgagcctcatataccgtgc
ttaatgcctgagtactttgagcctcagattgaagatgtaagcgaagctgccctggaggag
cgaatcagactcagaaaagtcagagcttctgtggacatgtttgaccagctcttgcaagca
ggaaccacagtctctcttgaaacaactaatagtcttttggatttattgtgttactatggt
gaccaagagcccccagctgactatccttttcaacaaactgaacatttggaaaacttggaa
gaagctgcagaggaaaataatcaaacatccaagatggagtctggtccttggaaagcacaa
aacaatgctgagaggatcttcgctttaatgccagagaagaatgcacgctcctactgcacg
atgatccgagggatggtgaagcaccgagcttatgcacaggcactgaacgtgtacacagag
ttattaaataacagacttagtgctgatgtatatacctttaatgcattgattgaagcaaaa
acattcatactcaatgagaaatttgaggaaaaatggaatgatatactggatctactgaaa
catatggttgcacagaaagtgaaaccaaatctgcagacttttaatacaatattgaaaggt
ctccggaagtgttactcacttggaaggataccagccttacagatactacgtgaaatgaaa
catattggaatagaaccctcacttgcaacataccatcatattattcacctcttttatcca
agagatttaagcgctataaaaatgccatccctcatcatctatgatatcatgaatgaatta
gagggaagaacattttctccacaggaccttgatgatggtagattttttcagttggccatg
agtgtgtgttcatctctcagagatttagagcttgcttaccaagtacacagacttttaaac
acgggggacaaccggaaactggtcggacatgatcctctacgtaaggtatattattcgaag
tttttcagtttgatttgttcactggaacaaattgatgtcaccttgaagtggtataaggac
ctaataccttcagtgttccttccccactaccaaatattcataggtcttcttcaagcattg
gatgtggccaatagactagaattggttcctcagatttggaaagatagtaaagaatacagt
catactttccgagatgccctaagagaagaagtattgatgctcatggccagggataaacat
ccaccagagcttcaggttgcatttgctgactgtgctgctgatatcaaatccacatacgaa
gaccagagtgcccggcagcctgcttttgattggccagccaaccctttacagtatatagct
gtcctttttttaagaggtggcagaagccaggaagcctggaaaatgttggaactcttcaaa
aagcacaagaagattcccagaaatgaattgctggaggaattcatggacacagcgaaagca
tccggtagcactgctctggccattgaggttgtaaagctggcaagtgccttcagcttgcct
attggggagagccttgcccaaagagtagtgatggatttcacagttgacccagaacaaaaa
gaagccctgggtaacctcactgaactgaacagtagcgatggagaaagcagcagtgacagt
gacagtgacgacaaatga

  All links  
Gene (17)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (40)   
   RefSeq(nuc) (12)   
   GenBank (14)   
   EMBL (14)   
3D Structure (4)   
   PDB (4)   
Protein domain (8)   
   Pfam (8)   
All databases (76)   

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