KEGG   Mus musculus (house mouse): 77040
Entry
77040             CDS       T01002                                 
Symbol
Atg16l1, 1500009K01Rik, Apg16l, Atg16l, WDR30
Name
(RefSeq) autophagy related 16 like 1
  KO
K17890  autophagy-related protein 16-1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04136  Autophagy - other
mmu04140  Autophagy - animal
mmu04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    77040 (Atg16l1)
   04136 Autophagy - other
    77040 (Atg16l1)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    77040 (Atg16l1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    77040 (Atg16l1)
   03029 Mitochondrial biogenesis [BR:mmu03029]
    77040 (Atg16l1)
Membrane trafficking [BR:mmu04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    77040 (Atg16l1)
 Others
  Specific organelles associated proteins
   Auto phagosome
    77040 (Atg16l1)
Mitochondrial biogenesis [BR:mmu03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    77040 (Atg16l1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st ATG16 Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st DSE1_N Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_RIG_2nd WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_VPS8 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_NOL10_N NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_DCAF12 CFAP251_N Beta-prop_ACSF4 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_NWD2_C Tricorn_2nd KASH_CCD ASA1
Other DBs
NCBI-GeneID: 77040
NCBI-ProteinID: NP_084122
MGI: 1924290
Ensembl: ENSMUSG00000026289
UniProt: Q8C0J2
Structure
Position
1:87683730..87720150
AA seq 607 aa
MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEK
HDMPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DKEIQMNEAKISEYLQTISDLETNCLDLRTKLQDLEVANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSDHTEETSPVRAVSRAATKRLSQPAGGLLDSITNIFGRRSVSSIPVPQDIMDT
HPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKG
SLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN
ARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES
VVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRV
VFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSR
AVLWAQP
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgtcgtcgggcctgcgcgccgcagactttccccgctggaagcgtcacatcgcggaggaa
ctgaggcgccgggaccgactgcagaggcaggcgttcgaggagatcattctgcagtatacc
aagttgctggaaaagtcagatcttcattcagtattgacccagaaactacaagcagaaaag
catgacatgccaaataggcatgaaataagtcctggacatgatggtgcgtggaatgatagt
caactacaagaaatggcccagttgaggatcaaacaccaggaagagctgaccgaactgcac
aagaagcgtggggagttagctcagttggtgattgacctgaacaaccaaatgcagcagaag
gacaaggagatacagatgaatgaagcaaagatttcggagtatttacagaccatctctgac
ctggagacaaactgcctggacctgcgcaccaaactgcaggacctcgaggtagccaaccag
accctgaaggatgagtatgacgccctgcagattacttttactgccctagaagagaaactg
aggaaaactactgaggagaaccaggaactggtcaccagatggatggctgagaaggcccaa
gaagccaatcgcctcaatgcagagaatgagaaggactccaggaggcgtcaagcacggctg
cagaaggagcttgcagaagcagcaaaggaacctctacctgttgaacaggatgatgacatt
gaagtcattgtggatgagacctcagaccacacagaagagacctctcccgtccgagctgtc
agcagagcagctactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttgggagacgctctgtctcttccatcccagtcccccaggatatcatggacact
catcctgcttctggtaaagatgtgagagtcccaactactgcctcgtatgtcttcgatgcg
catgacggagaggtcaacgcagtgcagttcagtccaggctcccggttgctggccactgga
ggcatggaccgcagggtgaaactttgggaagcattcggagataaatgtgaattcaagggc
tccctgtctggcagtaatgctggaattacaagcattgaatttgatagtgctggagcttac
ctattagcagcttcaaatgattttgcaagccgaatctggactgtggatgattatcgatta
cggcacacactcacaggccacagcgggaaagtcctctctgccaagttcctgctggacaat
gcacggattgtctcaggaagtcacgaccggaccctcaaactctgggatctccgcagcaaa
gtctgcataaaaacagtgtttgcaggatccagctgcaatgacattgtttgcactgaacaa
tgtgtaatgagtggacattttgacaagaaaattcgtttctgggatatccggtcagagagt
gtggtccgagagatggaactgttagggaagatcactgctctggacctaaaccctgagaga
actgagctcctgagctgctcccgtgatgacctgctaaaagtcatcgacctccggacaaat
gcagtcaaacagacattcagtgcgcctggattcaaatgcggctctgactggacccgggtt
gtcttcagccctgatggcagttacgtggcagcaggctcagccgagggttctctttatgtc
tggagtgtgctgacagggaaagtggagaaggttctttcaaaacagcacagctcttctatc
aatgcggtggcgtgggccccctcgggcttacatgttgtcagtgtggacaaaggaagcaga
gctgtgctgtgggcacagccttga

  All links  
Gene (9)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (42)   
   RefSeq(nuc) (4)   
   GenBank (19)   
   EMBL (19)   
3D Structure (3)   
   PDB (3)   
Protein domain (46)   
   Pfam (46)   
All databases (106)   

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