KEGG   Mus pahari (shrew mouse): 110315779
Entry
110315779         CDS       T05929                                 
Symbol
Pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
  KO
K15682  ligand of Numb protein X 3/4 [EC:2.3.2.27]
Organism
mpah  Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mpah04121]
    110315779 (Pdzrn3)
Enzymes [BR:mpah01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110315779 (Pdzrn3)
Ubiquitin system [BR:mpah04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Ligand of Numb proteins
    110315779 (Pdzrn3)
SSDB
Motif
Pfam: PDZ PDZ_6 PDZ_2 zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX Sina_ZnF zf-C3HC4_3 zf-TRAF zf-C3HC4_4 zf-RING_5 TRAF3_RING Prok-RING_4 Tricorn_PDZ zf-rbx1 zf-RING_6
Other DBs
NCBI-GeneID: 110315779
NCBI-ProteinID: XP_021045407
Ensembl: MGP_PahariEiJ_G0022443
Position
2:complement(117844461..118072434)
AA seq 1063 aa
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQDLPEHLERCDFAPARCRHAGCGQL
LLRRDVEAHMRDACDARPVGRCQEGCGLSLTHGEQRAGGHCCARALRAHNGALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKEGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPASESQLVDTGTQT
DITFEHIMALTKMSSPSPPVLDPYLLPEEHPSSHEYYDPNDYMGDIHQDMDREELELEEV
GLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGEDATASANPL
AGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPEDECERFRELLELKCQVQSAS
PYSLYYPSSPLDAAGKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLKEQYRESW
MLHHSGFRNYNTSVDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSL
RRVAEGSSEGATANIEAYRPNPKNLLAITEDPEVSTPNYNPSAKELDPSQALEIKERRVS
DGSRSPTASPKLGSAYLPSYHHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMSLV
SMCKDLNSSNSAEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDA
MSEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQASDDRKEMNILELSHK
KMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq 3192 nt   +upstreamnt  +downstreamnt
atgggtttcgagttggaccgcttcgacggcgacgtggaccctgatctgaagtgcgccttg
tgccacaaagtcctggaggacccgctgaccaccccgtgcggccacgtattctgcgccggc
tgcgtgctaccctgggtagtgcaggagggcagctgccccgcgcgttgtcgcggtcgcctc
tcggctaaggagctcaaccacgtcctgccgctcaagcgtctcatcctcaagttggacatc
aagtgcgcgcacgcggcgcggggctgcggccgggtggtcaagttgcaggacttgcccgag
cacctggagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccagctg
ctgctgcgacgagacgtggaggcccacatgcgcgacgcgtgcgacgcgcggcccgtgggt
cgctgccaggagggctgcgggctgtcgctgacgcacggcgagcagcgggcgggcggccac
tgctgcgcgcgggctctgcgggcgcacaacggcgcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgggccggcaagcgcgagaagtcgctggtggcg
cagctggccgccgcgcagctcgaactgcagatgaccgcgctgcgctaccagaagaagttc
accgagtacagtgcgcgcctcgactcgctcagccgctgcgtggccgcgccgccaggcggc
aagggcgaagagaccaaaagcctgactctggtcctgcatcgggactctggttccctggga
ttcaatatcatcggcggccgaccctgtgtggacaatcaagatggatcctccagtgaagga
atctttgtatccaaaatagttgacagcgggcctgcagccaaggaaggaggcctgcaaatt
catgacaggattattgaggtcaatggcaaagacttatcccgagcaactcatgaccaggct
gtggaagctttcaagacagccaaggagcccattgtggtgcaggtgttgaggaggacgcct
cgaaccaagatgttcacgcctgcctcagagtcacagctggtagacacgggcacccaaacc
gacatcacctttgagcacatcatggccctgacaaagatgtcttctcccagcccacctgtg
ctggatccctacctgctgcctgaagagcatccctcatcccatgaatactatgatcccaat
gactacatgggggacatccatcaggacatggacagggaggagctggagctggaggaagtg
ggcctctacaggatgaacagccaggacaagctgggtctcactgtgtgctaccggacagat
gacgaagatgacattgggatatatataagtgagattgacccaaacagcattgcagccaag
gatggacggatccgggaaggagatcgcatcatccagattaatggcatcgaagtacagaac
cgtgaagaggccgtggcgcttctaaccagtgaagaaaacaagaacttttcattgctgatt
gcgaggcctgagctccagctggatgagggctggatggacgacgacaggaacgactttctg
gatgatttacacatggacatgctcgaggaacagcatcaccaggccatgcagttcacagcc
agtgtgctgcagcagaagaagcatgaggaagacggtgggaccacagacacagccaccatc
ttatccaaccagcacgagaaagacagcggtgtgggacgaacggatgagagcacccgcaat
gatgagagctcagaacaggagaataatggtgaagacgccacggcgtctgccaacccgctg
gcaggccagaggaagctgacctgtagccaggacaccctgggcagtggcgacctgcctttc
agcaacgagtccttcatctctgcggactgtaccgatgtggactacctgggcatcccagag
gatgagtgcgagcgtttccgcgaactgctggagctcaagtgccaggtgcagagcgccagc
ccctacagcctgtactaccccagcagcccgctggatgctgctggcaagagtgaccccgag
agcgtggacaaggagctggagctactcaatgaggagttgcgtagcatcgagctggagtgc
ctaagcatcgtgcgtgcgcacaagatgcagcagctcaaggagcagtaccgtgagtcctgg
atgctgcaccacagtggcttccgcaactacaacaccagtgtggatgtgcgccgccatgag
ctctcggacatcactgagctgccagagaagtcagacaaggatagttcaagcgcctacaac
acgggggagagctgcaggagtaccccactcaccctggagatctctccggacaactccctg
cggagagtggccgagggcagtagtgaaggggccacagctaacatcgaagcttacaggcca
aatcccaagaatctgctcgccatcaccgaggaccctgaagtaagcaccccaaactacaac
cctagcgccaaagagctggaccccagccaggctttggagatcaaagaacgccgagttagc
gatggcagcaggagccccacagccagcccaaagctgggcagtgcctacctgccctcatac
caccactccccttacaaacacgcgcacatcccagctcacgcgcaacactaccagagctat
atgcacctgatccagcagaagtcagcagtggagtatgcgcagagccagatgagcctggtg
agcatgtgcaaggacttgaactcttctaactccgcggaacccaggatggaatggaaagtg
aagatccgcagtgacgggacgcgctacatcaccaagaggccagtgcgtgacaggctgctg
cgggagcgcgcgctgaagatccgcgaggagcgcagtggcctgaccacggatgatgacgcc
atgagcgagatgaagatggggcgctactggagcaaggaggagcgcaagcaacatctggtg
aaggccaaggaacagaggcggaggcgcgagtttatgatgcagagccggctggattgtctg
aaggagcagcaggcatccgacgacaggaaggagatgaacatcctggaactgagccacaaa
aagatgatgaagaagaggaacaaaaagatctttgacaattggatgactatccaagaactc
ttaacccacggcacaaaatcgccagatggcactagggtatacaattccttcctgtcggtg
actactgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (17)   
   Pfam (17)   
All databases (30)   

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