KEGG   Mus pahari (shrew mouse): 110316910
Entry
110316910         CDS       T05929                                 
Symbol
Chd4
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah03082  ATP-dependent chromatin remodeling
mpah05165  Human papillomavirus infection
mpah05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110316910 (Chd4)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    110316910 (Chd4)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    110316910 (Chd4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mpah03036]
    110316910 (Chd4)
Chromosome and associated proteins [BR:mpah03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110316910 (Chd4)
  Chromatin remodeling factors
   NuRD complex
    110316910 (Chd4)
SSDB
Motif
Pfam: CHDCT2 SNF2-rel_dom CHDII_SANT-like Helicase_C CHDNT DUF1087 PHD Chromo HDA2-3 PHD_2 ResIII DEAD
Other DBs
NCBI-GeneID: 110316910
NCBI-ProteinID: XP_021046919
Ensembl: MGP_PahariEiJ_G0022629
Position
2:140214760..140250278
AA seq 1855 aa
MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP
RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK
SKSKRKEEEEEEDEDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA
PPPPPVEVPIRKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKR
SSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYET
DHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDN
SEGEEILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGE
WLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGRPERQFFVKW
QGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKNKDPKFAE
MEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLF
KQGYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDVSGHSKGPFLVSAPLSTIIN
WEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLL
TSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNL
EELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSK
TELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAA
MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHE
GYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN
PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGS
MSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTE
LQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDL
ARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDYSVASEEGDEDFDERSEAPRRPSR
KGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLR
GKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEF
EHVNGRWSMPELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEEN
TLKEEESTEGEKEVKSTAPEATVECTQPPAPATAPATTTATASAPEDDKAPAEPPEGEEK
VEKAEVKERTEEPMETEPKGTTEVEKVEEKSAVDLTPIVVEDKEEKKEEEEKKEVMLQNG
ETPKDLSDEKQKKNIKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWL
LAGIINHGYARWQDIQNDPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEE
QLRRAAYLNMSEDPSHPSMALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQL
EELLSDMKADVTRLPATIARIPPVAVRLQMSERNILSRLANRAPEPPPQQVAQQQ
NT seq 5568 nt   +upstreamnt  +downstreamnt
atggcgtcgggcctgggctccccgtccccctgctcagcgggcagtgaggaggaggatatg
gatgcacttctgaacaacagcctgcccccaccccatccagaaaacgaggaagacccggaa
gaggatttatcagaagcagagactccaaagctcaagaagaagaaaaagcctaagaaacct
cgagaccctaaaatccctaagagcaagcgccaaaaaaaggagctgggggacagctctggg
gaggggccagagtttgtggaggaggaggaagaggtggctctgcgctcagacagtgagggc
agcgactatactcctggcaagaagaagaaaaagaagcttggacctaagaaagagaagaag
agcaaatccaagcggaaggaggaggaggaagaggaggacgaggatgatgattccaaggaa
cctaagtcatctgcccagcttttggaagactggggcatggaagacatcgaccatgtgttc
tcagaagaagattaccggaccctcaccaactacaaggccttcagccagtttgtccgaccc
ctgattgctgctaaaaaccccaagattgctgtctccaagatgatgatggtcttgggtgca
aagtggagggaattcagtaccaacaaccccttcaagggcagctcaggagcgtcagtggca
gctgcagctgcagcggctgtggctgtggtggagagcatggtgacagctactgaagttgcc
cctccccctccccccgtggaggtgccgatccgcaaggccaagaccaaggagggcaaaggt
cccaatgctcggaggaagccgaaaggcagcccgcgagtgcctgacgccaagaagcccaaa
cccaagaaagtagcccctctgaagataaagctgggagggttcggctccaagcggaagaga
tcctcgagtgaggacgacgatttagatgtagagtctgacttcgacgatgccagtatcaat
agctattctgtttcggatggttccaccagccgcagtagtcggagccgtaagaaactccgg
accactaaaaagaaaaagaaaggcgaggaggaggtgactgctgtggatggttatgagaca
gaccaccaggactattgtgaggtgtgccagcaaggcggcgagatcatcctgtgtgatacc
tgtccccgagcctaccatatggtgtgcctggacccagacatggagaaggcccccgagggc
aagtggagctgcccacactgtgagaaggagggcatccagtgggaagctaaggaggacaat
tctgagggcgaggagattctggaagaagttgggggagacccagaagaggaggatgaccat
catatggaattctgtcgtgtctgcaaggatggcggggagcttctatgctgtgacacctgc
ccttcttcctaccatatccactgcctgaaccctccgctgccagagatcccaaatggcgaa
tggctctgtccccgctgtacttgtccagctcttaagggcaaagtgcagaagatcctaatt
tggaagtggggccagccaccgtctcccacaccagtgcctcggcctccagatgctgatcct
aataccccatctcccaaacccttggaggggcggccggagaggcagttctttgtgaaatgg
caaggcatgtcttactggcactgctcctgggtgtcagaactgcagttggagctgcactgt
caggtgatgttcagaaactaccaacggaagaatgatatggatgagccaccttctggggac
tttggtggagatgaagagaagagccgaaagcgaaagaacaaggaccctaagtttgcagag
atggaagagcgcttctaccgctatggaataaaaccggagtggatgatgatccaccgcatc
ctcaaccacagtgtggacaagaagggccacgtccactatttaatcaagtggcgagactta
ccctatgaccaggcgtcttgggagagtgaggatgtggagatacaggactatgacctgttc
aagcagggctactggaaccacagggaattaatgaggggcgaagaaggacgacctggcaag
aagcttaagaaggtgaagctacggaaactggaaaggcctccggagaccccaactgttgat
gtgagtggtcactccaaaggccccttcttagtgagcgctcctctgtccaccatcatcaac
tgggagagagagtttgagatgtgggctcctgatatgtatgtggtaacctatgtgggtgac
aaggacagccgtgccatcatccgggaaaatgagttctcctttgaagacaatgccatccgt
ggtggcaagaaggcctcaaggatgaagaaagaagcgtctgtgaagttccatgtcctgctg
acatcctacgagttgatcaccattgatatggccatcttgggctctattgactgggcctgc
ctcattgtggatgaagcccatcggctgaagaacaaccagtctaagttcttccgagttttg
aacggttactcactccagcacaagctgttgctaactggaacgccattacaaaacaatcta
gaggagctgtttcatctgctcaactttctcacccctgagaggttccacaacttagaaggc
ttcttggaggagtttgcagacattgccaaagaggaccagattaaaaaacttcacgacatg
ctggggcctcacatgctgcggcggctcaaagcagatgtcttcaagaatatgccatccaag
acagagctgattgtgcgtgtggagttgagccctatgcagaagaagtactacaagtatatt
ctcacgcggaatttcgaagcacttaatgctcgaggtggtggcaaccaggtttctctgctg
aatgtggtgatggatcttaagaagtgctgcaaccacccttacctcttccctgtggcagcg
atggaagcccctaagatgcctaatggtatgtatgatggcagtgccctaatccgagcatct
gggaagttgttgctgctgcagaagatgcttaagaacctgaaagagggagggcaccgtgtg
ctcatcttctcccagatgaccaagatgttggacttgctagaggattttttagaacatgaa
ggttataaatatgaacgcattgatggtggaatcactgggaacatgcgtcaggaggccatt
gatcgattcaatgcaccgggagctcaacagttctgcttcttgctttccactcgagctggg
ggccttggaatcaatctggccactgctgacacagttattatatatgactctgactggaac
cctcataatgacatccaggcctttagcagagcccaccgtattgggcaaaataagaaggtg
atgatctaccggtttgtgacccgtgcatcagtggaggagcgcatcacacaggtggcaaag
aagaagatgatgttgacacatttagtggtacggcccggtctgggctccaagacaggctcg
atgtccaaacaggagcttgatgatatcctcaagtttggcactgaggaactattcaaggat
gaagccacagatggaggaggagacaacaaggagggagaagacagcagtgttatccattat
gacgataaggccattgaacgactgctggatcgaaaccaggatgagactgaagacacagaa
ttacagggcatgaatgaatatttgagctcattcaaagtggctcagtatgtggtacgggaa
gaagagatgggggaggaagaggaggtagaacgggaaatcataaaacaggaagagagtgtg
gatcctgactactgggagaaattgctgcggcaccattatgagcagcagcaagaagatcta
gcccgaaatctgggcaaaggaaaaagaatccgtaaacaggtcaactacaatgatggctca
caggaggaccgagattggcaggacgaccagtccgacaaccagtccgattactcggtggcc
tcagaggaaggtgatgaagactttgacgaacggtcagaagctccccgcaggcccagtcgc
aagggcctgcggaatgataaagataagccgttacctcctctgctggcccgtgttggtggg
aacattgaagtacttggttttaatgctcgtcagcgaaaagcatttcttaatgcaattatg
cgatatggcatgccaccccaggatgcttttaccactcagtggcttgtgagagatcttcga
ggcaagtcagagaaagaatttaaggcttatgtgtcactgttcatgcgacatctgtgtgag
cctggggcagatggggctgagacctttgctgatggcgtcccccgagaaggcctgtctcgt
caacatgttctcactaggatcggtgttatgtctctgattcgaaagaaggttcaggagttt
gaacatgttaatggacgctggagcatgccagaactggctgaagtagaggaaaacaaaaaa
atgtctcagccaggttcaccctctcccaagactcctacaccttccacaccaggggacaca
cagcccaacactcctgcgcctgtgccgcctgctgaggatgggataaaaatagaggaaaat
acccttaaagaagaagagagcactgaaggagagaaggaagttaaatctacagcccctgag
gcgactgtggagtgtacacagccccctgcccctgccactgcccctgccactaccactgct
actgccagtgcccctgaggatgacaaggctcctgccgagcctcctgagggggaggaaaaa
gtggaaaaggcagaggtgaaggagagaacagaggagcctatggagacggagcccaaaggt
actacagaggtggagaaagtagaggagaagtctgcggtagacctgaccccaatcgtggtg
gaagacaaagaagagaagaaggaggaggaagagaaaaaggaggtgatgcttcagaatgga
gaaactcccaaggatctcagtgatgagaaacagaagaaaaacatcaaacagcgtttcatg
ttcaacattgcagatggtggttttactgagttgcattccctgtggcagaatgaagagcgg
gcagccacagtcactaagaagacttatgagatctggcaccgtcgccatgactactggctg
ctggcgggcattataaaccacggctatgcccggtggcaggacatccagaatgacccacgg
tatgccatcctcaatgagcctttcaagggtgaaatgaatcgtggcaattttctagagatc
aagaataaatttttagctcgaagattcaagctcttagaacaagccctggtgatcgaggag
cagcttcgcagggcagcttacctgaacatgtccgaggacccctctcacccgtctatggcc
cttaacacccgcttcgctgaggtggagtgtttggcagagagtcaccagcacctgtccaag
gagtcgatggcagggaataagccggccaatgcagtcctacacaaagtcctgaaacagctg
gaggaactgttgagtgacatgaaagctgatgtgacgcggctcccagccaccattgcccgc
atccccccggtcgctgtgaggttacagatgtcagagcggaacattctcagccgcctggca
aacagggcgccagaacctcccccgcagcaggtagcccagcagcagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (24)   

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