KEGG   Mus pahari (shrew mouse): 110321222
Entry
110321222         CDS       T05929                                 
Symbol
Atg4b
Name
(RefSeq) cysteine protease ATG4B
  KO
K08342  cysteine protease ATG4 [EC:3.4.22.-]
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah04136  Autophagy - other
mpah04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    110321222 (Atg4b)
   04136 Autophagy - other
    110321222 (Atg4b)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:mpah01002]
    110321222 (Atg4b)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mpah04131]
    110321222 (Atg4b)
   03029 Mitochondrial biogenesis [BR:mpah03029]
    110321222 (Atg4b)
Peptidases and inhibitors [BR:mpah01002]
 Cysteine peptidases
  Family C54: Aut2 peptidase family
   110321222 (Atg4b)
Membrane trafficking [BR:mpah04131]
 Autophagy
  Autophagosome formation proteins
   Atg8 conjugation proteins
    110321222 (Atg4b)
Mitochondrial biogenesis [BR:mpah03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    110321222 (Atg4b)
SSDB
Motif
Pfam: Peptidase_C54 ATG4_LIR
Other DBs
NCBI-GeneID: 110321222
NCBI-ProteinID: XP_021053024
Ensembl: MGP_PahariEiJ_G0027698
Position
5:71059807..71089906
AA seq 393 aa
MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRRNFPA
IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWAQRKRQPDSYFNVLNAFLDRKD
SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR
RLCRASLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINEAYV
ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDESFH
CQHPPCRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQPSHLA
CQDVLNLSLDSSDVERLERFFDSEDEDFEILSL
NT seq 1182 nt   +upstreamnt  +downstreamnt
atggacgcagccactttgacatatgatactctccggtttgctgaatttgaagatttccct
gagacctcagagcctgtttggattctgggcagaaaatacagcattttcacagagaaggac
gaaatcttgtctgatgttgcatccagactttggtttacatacaggagaaactttccagcc
attgggggaactggccctacttcagacacaggctggggttgcatgcttcggtgtggacag
atgatctttgcccaggccctggtatgccggcacttaggtcgagattggagatgggctcag
cggaagagacagcctgacagctactttaatgtcctcaatgctttcctcgacaggaaggac
agctactattccattcaccagatagcgcaaatgggagttggcgaaggcaagtctataggc
cagtggtacgggccgaacactgttgcccaggtcctcaagaaacttgctgtattcgacaca
tggagttccttggctgttcacatagcaatggacaacactgtggtgatggaggaaatcaga
aggttgtgcagggccagccttccctgtgctggggcagctgcacttcctactgattcagag
aggcactgtaatgggttccctgctggagctgaagttaccaacaggccatcagcttggaga
ccactagtgcttctcatccctctccgcctgggactgacagacatcaatgaggcctatgtg
gagacgctgaagcactgtttcatgatgccccagtccctgggtgttattggagggaagccc
aacagtgcccactactttattggctacgttggtgaggagctcatttatctggacccccat
actacacagcctgcagtggagctgactgacagctgctttatccctgacgagagcttccac
tgccaacaccctccctgtaggatgggcattggagagcttgacccatccattgctgtggga
tttttctgtaagacggaggaagactttaacgactggtgtcagcaagtcaaaaagctatcc
cagcttggaggtgccctgcctatgtttgagctggtggaacagcagccttcccatctggcc
tgccaggatgtcctgaacctgtccctagactcttctgatgtagagagactggagaggttc
tttgactctgaggatgaagactttgaaatcttatccctctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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