KEGG   Mus pahari (shrew mouse): 110321353
Entry
110321353         CDS       T05929                                 
Symbol
Vps4b
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah03250  Viral life cycle - HIV-1
mpah04144  Endocytosis
mpah04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    110321353 (Vps4b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    110321353 (Vps4b)
  09143 Cell growth and death
   04217 Necroptosis
    110321353 (Vps4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mpah04131]
    110321353 (Vps4b)
   03400 DNA repair and recombination proteins [BR:mpah03400]
    110321353 (Vps4b)
Membrane trafficking [BR:mpah04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    110321353 (Vps4b)
DNA repair and recombination proteins [BR:mpah03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    110321353 (Vps4b)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 AAA_5 RuvB_N AAA_22 IstB_IS21 AAA_2 AAA_25 AAA_18 DUF815 AAA_33 nSTAND3 RNA_helicase AAA_24 AAA_17 PhoH AAA_7 Mg_chelatase ResIII AAA_28 NACHT Parvo_NS1 bpMoxR TPR_1 DUF5906 KAP_NTPase TPR_10
Other DBs
NCBI-GeneID: 110321353
NCBI-ProteinID: XP_021053236
Ensembl: MGP_PahariEiJ_G0027724
Position
5:complement(82772125..82798868)
AA seq 444 aa
MASTNTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKKKEKKPQKPVKEDQSGPVDEKGNDSDGEAESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSS
TKPTVNEQDLLKLKKFTEDFGQEG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggcgtccacgaacaccaacctccagaaagcaatagatcttgcaagcaaagcagcccag
gaagacaaagctgggaactatgaggaagctcttcaactctaccaacatgctgtgcagtat
tttctccatgttgttaaatatgaagcacaaggtgataaagccaagcaaagtatcagggcc
aagtgtacagaatatcttgacagagcagaaaaactaaaggaatatctgaagaaaaaagag
aagaaaccacagaagcctgtgaaagaggatcagtcaggcccagttgacgagaaggggaat
gacagtgatggggaagcagaatctgatgatcctgaaaaaaagaaactgcagaatcaactt
caaggtgccattgtgatagagcgaccaaatgtgaagtggagtgatgttgctggtctcgaa
ggagccaaagaagctcttaaagaggctgtgattctgcctattaagtttcctcatctgttt
acaggaaagagaacaccttggagaggaatcctattatttggaccaccaggaacaggaaaa
tcttatttggctaaagctgttgcaacagaagcaaacaactcaacatttttctcaatatct
tcctctgaccttgtgtctaagtggctgggggaaagcgaaaagctggttaagaacttattc
cagcttgccagagagaacaagccttccatcatcttcatcgatgagattgattctctgtgt
ggttctagaagtgagaatgagagtgaggctgcacggagaattaaaacagagttcctggtt
caaatgcaaggagtcggtgtggacaatgatggcattttggttctgggagctacaaatata
ccctgggttctggattctgcaattaggcgaagatttgagaaacgtatttatattcctttg
cctgaagcccatgcccgagcagccatgtttagactgcacttgggcagcactcagaacagc
ctcacagaagcagacttccaagaacttgggaggaagacggatggctattcaggagcagat
ataagtatcattgtacgggatgcacttatgcagcctgtgagaaaagttcagtcagctact
cacttcaaaaaggttcgtggaccctcaagagctgatcctaactgcattgtaaatgacctg
ctgacaccctgctctcccggagatcctggggctattgaaatgacatggatggacgttcct
ggagataaactcttggagccagttgtatccatgtgggatatgctgcggtccctgtccagc
acaaagccgacagtcaacgagcaggacttgttgaaactgaagaagtttacagaagatttt
ggccaggaaggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (32)   
   Pfam (32)   
All databases (45)   

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