KEGG   Mus pahari (shrew mouse): 110327226
Entry
110327226         CDS       T05929                                 
Symbol
Vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah04140  Autophagy - animal
mpah04148  Efferocytosis
mpah05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    110327226 (Vps11)
   04148 Efferocytosis
    110327226 (Vps11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    110327226 (Vps11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mpah04131]
    110327226 (Vps11)
Membrane trafficking [BR:mpah04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    110327226 (Vps11)
   Hops complex
    110327226 (Vps11)
SSDB
Motif
Pfam: VPS11_C Clathrin zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-rbx1 zf-C3H2C3 zf-RING_UBOX zf-RING_5 TPR_11 DLP_helical zf-HC5HC2H zf-RING_11 zf-C3HC4_3 zf-RING-like zf-ANAPC11 DUF5847
Other DBs
NCBI-GeneID: 110327226
NCBI-ProteinID: XP_021061681
Ensembl: MGP_PahariEiJ_G0014981
Position
10:complement(39456920..39468992)
AA seq 960 aa
MTRLAVHVISLPEAGAFDKMAAYLQWRRFVFFEKELVKEPLGNDGAAPGAAPVSGSAASK
VLCLPPGITVCDSGRGSLVFGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILAS
VGEDEEGINPLVKIWNLEKRDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLNFMAIGFTD
GSVTLNKGDITRDRHSKTQILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDY
PRVELDTHGCGLRCSALSDPSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRG
YLVIVSRDRKVSPKSEFTSRDSQSSDKQILNIYDLCNKFIAYSAVFEDVVDVLAEWGSLY
VLTRDGRVHALQEKDTQTKLEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSK
GNHDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCY
TKLKDSSKLEEFIKTKSESEVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLE
DIKNYQEALRYIGKLPFEQAESNMKRYGKILMHHIPEQTTQLLKGLCTDYRPSLEGRGDR
EAPSCRASSEEFIPIFANNPRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQ
AKEKLHAEAISLLKSGRFCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQ
YRQVIAVCERHGEQEPSLWEQALSYFARKEEDCKEYVAAVLRHIENKSLMPPLLVVQTLA
HNSTATLSIIRDYLVQKLQKQSQQIAQDELRVRRYREETTRIRQEIQELKESPKIFQKTK
CSICNSALELPSVHFLCGHSFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLH
DQFQHQLKCSNDSFSVIADYFGRGVFNKLTLLTDPPTARLTPSLEAGLQRDLLMHSRRGT
NT seq 2883 nt   +upstreamnt  +downstreamnt
atgactcgccttgcggttcacgtgatttcgcttccggaggcgggggccttcgacaagatg
gccgcctacctgcagtggcggcgtttcgttttcttcgagaaggagctggtgaaggagccg
ctgggtaatgatggggccgctcccggggccgcgcctgtgtcgggatccgctgcttccaag
gtcctctgcctccctcccggcatcactgtctgcgactcgggccgcgggagcctggtcttt
ggagatatggaaggccagatctggtttttgccacgttctctacagcttacagggttccag
gcctacaaactacgggtgacacacttatatcagctgaagcaacacaatattctggcatcg
gttggtgaggatgaagagggtattaaccctctggtaaagatctggaatctggaaaagaga
gatggtggcaatccactctgcacccggattttccctgccatcccagggacagagccaact
gttgtgtcttgtttgactgtccatgagaacctcaactttatggccattggtttcacagat
ggcagtgtcactctgaacaagggagatattacccgggaccggcacagcaagacacagatt
ttgcacaagggcaactatcctgttactggactggcctttcgccaagcaggaaagaccact
cacttgtttgtcgtgacaactgaaaatgttcagtcctatatagtttctggaaaggactac
cctcgtgtggagttggatacccatggttgtggcctgcgctgttcagccctgagcgaccct
tctcaggacctgcagttcattgttgctggggatgagtgtgtctacctttaccagcccgat
gaacgtggaccctgctttgcctttgagggccataagctcatcgcccactggtttagaggc
taccttgtcattgtctcccgtgaccggaaggtttctcccaagtcggagtttaccagcagg
gactcacagagctctgacaagcagatcctcaacatctatgacctgtgcaacaagttcatc
gcctacagcgctgtttttgaggatgtagtggatgtgctcgctgagtggggctccttgtac
gtgctgacgcgggatgggcgggtccacgcattgcaggagaaggacacacagaccaaactg
gagatgctatttaagaagaatctatttgagatggcaattaacctggctaagagtcaacat
ctggacagtgatgggttggctcaaattttcatgcagtatggagaccatctctacagcaag
ggcaaccatgatggggctgtgcagcaatatatccgaaccattggaaagttggagccatcc
tatgtgatccgtaagtttctggatgcccagcgcatccacaacttgaccgcctatctacaa
accctgcatcggcaatctctggctaatgctgatcataccaccctgcttctgaactgctat
accaagctcaaggacagctccaagttggaggaattcatcaagacaaagagcgagagtgaa
gtccactttgatgtggagacagccatcaaggtcctccggcaggctggctactactcccat
gccctctatctggctgagaatcacgcacatcatgagtggtatttgaagatccagctagag
gacattaagaactatcaggaagcccttcggtatatcgggaaactgcctttcgagcaagcg
gagagtaacatgaaacgctatggcaagatcctcatgcaccacataccggagcagacaacc
cagttgctgaaaggcctctgcactgactatcgacccagtctggaaggccgaggcgatcgg
gaggctccgagctgccgggccagctctgaggagttcatccctatctttgccaacaaccca
agagagctgaaagccttcctggagcacatgagtgaggtgcagccggactccccgcagggc
atctatgacacgctcctggagctgcggctgcagaactgggcccatgagaaggatccccag
gccaaggagaaacttcatgcagaggccatctccctgctgaagagtggccgattctgtgat
gtgtttgacaaggcattggttctatgccagatgcatgacttccaggatggggtcctttac
ctctatgagcaggggaagctgttccagcagatcatgcattaccacatgcagcacgagcag
tatcggcaggtgattgccgtgtgtgagcgccacggggagcaggagccctccctgtgggag
caggccctcagctacttcgcccgcaaggaggaagactgcaaggagtatgtggcggctgtg
ctcaggcacatcgagaacaagagcctcatgccgcctcttctagtggtccagaccctggcc
cacaactccacagctaccctgtctatcatccgagattacctggtccaaaaactgcagaaa
cagagccagcagatagcacaggatgagctccgggtgcggcggtacagagaggagacgact
cgcatccgccaggaaatccaggagctcaaggagagtccaaagattttccagaagaccaag
tgcagcatctgtaacagtgccttggagctgccctcagtccatttcctgtgtggccactcc
ttccaccaacactgctttgagagttactcagaaagtgatgctgactgccccacctgcctc
cctgagaaccgcaaggtgatggatatgatccgggcccaggaacagaaacgagatctccac
gatcagttccaacatcagctcaagtgctcgaatgacagcttctctgtgattgcggactac
tttggcagaggggttttcaacaagttgactctgctgaccgaccctcctacagccagactg
acccccagcctggaggctggactgcagcgggacctgctgatgcactccaggaggggaact
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (17)   
   Pfam (17)   
All databases (33)   

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