KEGG   Mus pahari (shrew mouse): 110328273
Entry
110328273         CDS       T05929                                 
Name
(RefSeq) collagen alpha-4(VI) chain
  KO
K06238  collagen type VI alpha
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah04151  PI3K-Akt signaling pathway
mpah04510  Focal adhesion
mpah04512  ECM-receptor interaction
mpah04820  Cytoskeleton in muscle cells
mpah04974  Protein digestion and absorption
mpah05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    110328273
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110328273
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110328273
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110328273
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    110328273
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    110328273
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mpah04147]
    110328273
   00536 Glycosaminoglycan binding proteins [BR:mpah00536]
    110328273
Exosome [BR:mpah04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   110328273
Glycosaminoglycan binding proteins [BR:mpah00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   110328273
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   110328273
SSDB
Motif
Pfam: VWA VWA_2 Collagen VWA_3 VWA_CoxE
Other DBs
NCBI-GeneID: 110328273
NCBI-ProteinID: XP_021063372
Ensembl: MGP_PahariEiJ_G0015478
Position
10:complement(99170325..99263478)
AA seq 2283 aa
MGTWKTFWLIISLVAGLGFVKSQKIVCREASVGDIVFLVHNSINPQYANSVRNFMYTLAN
SLQVGRENIRVGLAQYGDAPTSEFLLSAYHRKGDVLKHIRGLQFKPGGNRMGQALQFILE
HHFREGAGSRASQGVPQVAVVVSSGLVEDHIREPAEALRRAGILLYAIGVKDASQAELRE
VASSPKDNFTFFVPNFSGLPGLAQKLRPELCSTLAKAAQYTERESPACTEASLADIVFLV
DSSTSIGLQNFQKVKNFLHSVVSGLDVRSDQVQVGLVQYSDNIYPAFQLKQSSLKSAVLE
WIRNLPYSRGGTNTGSALEFIRANSLTEMSGSRAKDGVPQIVVLVTDGESSDEVQDVADQ
LKRDGVFVFVVGINIQDVQELQKIASEPFGEFLFTTENFSILQALSGTLLQALCSMVERQ
MKKSTKTYADMVFLIDTSQGTSQASFQWMQNFISRIIGILEVGQDKYRIGLAQYSDQGHT
EFLFNTHKTGNEMVTHIHEHLVLQGGSRKTGQGLRFLHWTFFQEAAGSRLLQGVPQYAVV
ITSGKSEDEVGEVAQILRKRGVGIMSVGLQDFDRAELEGIGPVVLVSDLQGEDGVRQLMQ
DVNMFIQGSPKPPRVMTDVARDAVEECPTPVPADLVFLVEDFSSAGQPNFQRVVRFLTTT
VHSLNIHPDTTRVGLVFYDEKPRLEFSLDMHQRAAQVSRHLDRLTFRARRGGAKAGAALD
FLRREVFLPEKGSRPHRGARQIAVVIMESPSLDNVSTPASHLRRAGVTIYAVGIQPASES
KDLEKIVTYPPWKHAIRLESFLQLSVVGNKLKKKLCPEMLSGMPPLMSYIPESTRQSTQE
GCVSVEKADIYFLIDGSGSIRPNDFIEMKDFMKEVIKMFHIGPDRVRFGVIQYSDRIVSQ
FFLTQYASMAGLSTAIDNIQQGGGGTTTGKALSKMVPVFEDTARIDVARYLIVITDGKST
DPVAEAAQGLRDIGVNIYAIGVRDANTTELEEIASKKMFFIYEFDSLKSIHQEVIRDICS
SENCKSQKADIIFLIDGSESIAPKDFEKMKDFMERMVNQSNIGADEIQIGLLQFSSTPRE
EFRLNQYFSKVDMCRAILNVQQMSDGTYTGKALNFTLPFFDSSRGGRPRVHQYLIVITDG
VSKDNVAPPAKALRDRNIIIFAIGVGDVQRAQLLEITNDQDKVYQEENFESLQSLEKEIL
YEVCSSQGCNIDLSVGVDTSTSSERVQQELGRLLPELMQQLAFLSNISCEAPGQMEPRFR
YVVPGSSDQPVFDSGFEKYSDETIQKFLVHQGSVNNHMDVDFLQSLGETAIHLSLAKVKV
LLVFTDGLDEDLERLRRTSEFLRSRGLSGLLLIGLGGAHKLEELQELEFGRGFAYRQPLS
SSLPSLPSVLLKQLDTIVERTCCNMYAKCYGDDGVRGDPGSRGEEGERGLDGLPGHPGEE
GDHGQRGPRGLPGLRGEEGCPGVRGPKGARGFSGEKGSPGEEGVGGLDGEQGDRGAAGSS
GEKGSSGSRGLTGLPGPAGPRGEPGLRGDPGDPGIDNFIQGPKGEKGRRGHQGSPGFHGP
LGEAGSVGPRGSLGRHGLPGLKGVLGETGELGSRGEPGHPGPQGPRGRQGPPGFFGQKGD
PGTQGNPGPPGPSGSKGPDGPRGLKGELGPAGQRGPQGQQGPRGQPGLSGPDGHGHPGRK
GRKGEPGFPGYPGVQGEDGNPGRGGEKGTKGIRGKRGNSGFPGLAGTPGDQGPPGKMGIK
GSKGLADRMPCEIVDFVRGNCPCSTGISRCPAFPTEVVFALDMSNDVSPSDFERMRNILL
SLLMKLEMSESNCPIGARVAIVSYNTRTDYLVRFSDHRGKAVLLQAVRKIPLERSSGSRN
LGATMRFVARHVFKRVRSGLLVRKVAVFFQAGRNYDTTSVSTATLELHAADIATAVVTFT
EEHNLPEAGLVDGPNEFHLFTWETEVQQDVERLASCTLCYDKCRPAPGCQLHAPRPQTLD
MDLVFLVDSSQGVSRDIYLGALRLVDSVLKDLEVAAQPGTSWHGARAALLTHTTPGFWPG
VDQAPVLEYFHLTSHGHRTQMQRQIREAASGLLQGGPALGHALEWTLENVLLTAVLPRRS
RVLYAIVASETSNWDREKLRALSQEAKCKGIALFVLVVGPGVGAQELAELARVASAPSEQ
HLLRLDGVSEAEVAYASRFTEAFLNLLNSGINQYPPPELVKDCGGPNRGDTLLRFFTSAK
RLSRSQSGTSAAFANDSEALKSPGIFLEARKSRVASVALQEALGSHGKDRADTEDIDQKT
AAK
NT seq 6852 nt   +upstreamnt  +downstreamnt
atgggaacttggaagacattttggttgatcatctcccttgtagctggtttgggcttcgtc
aagtcacagaagattgtctgcagggaggcgtctgtgggagacattgtgtttctggtccac
aacagcatcaacccccagtatgccaacagtgtgcggaacttcatgtatacactggccaac
agtttgcaagttggcagagagaacatccgggtgggtctggcccagtatggcgatgcacct
acttctgagttcctgctttcggcttatcaccgcaaaggcgatgtgttgaaacacatccgt
ggacttcagtttaagcccggaggcaacaggatgggccaggctctgcagttcatcttagag
catcacttccgggaaggagctgggagccgggcaagccaaggggtgcctcaggtggccgtg
gtggtgagcagcggtctagtagaggaccacattcgcgaacctgctgaggctctcaggaga
gcgggaatcttgttatacgctattggggtcaaagacgcatctcaggctgaactcagggag
gttgcgagtagtcccaaggataacttcaccttttttgttcccaacttctctggcttgcct
ggcctcgcccagaagctgcggccagagctttgcagtactctagcgaaggcagctcaatat
actgagcgggagtctccagcctgcacagaagcatccctggctgatattgtgtttttagtg
gacagttcaactagcattggactccagaacttccagaaagtgaagaatttccttcactct
gttgtctcggggctcgatgtcagaagtgatcaggtgcaagtggggctggtccagtacagt
gacaacatctacccagcctttcagctgaagcagtcctctctgaagagcgccgtcctggaa
tggatccggaatctgccctacagcagggggggcacaaatactggaagcgccctggagttc
atcagggccaactccttgactgagatgagtggcagtcgtgccaaggatggggttcctcag
atagttgtcctagtgacagatggggagtccagtgatgaggtccaggacgtggctgaccag
ctgaaaagagacggggtctttgtgtttgtggtagggatcaatattcaagatgtccaagaa
ttgcagaaaatagccagtgaaccatttggggagtttctcttcaccacagaaaacttcagc
atcttgcaggcactctcaggaaccctccttcaggccctgtgttccatggtggagaggcag
atgaaaaagtctaccaagacctacgcggacatggtctttcttattgacacctcccagggg
acatcacaggccagtttccagtggatgcagaatttcatctctagaattattggcatcctg
gaggtcggccaggacaaataccggattgggctggctcagtatagcgatcaaggtcacact
gagtttttgttcaatacccacaagaccgggaatgagatggtcacacacatccatgagcac
ttggtgctccaaggtggctccaggaagactggccaaggccttcggtttcttcattggact
ttcttccaggaggcagcaggaagccggctcttacagggtgtccctcagtatgcggtagtc
attacctcagggaaatctgaggacgaggtcggagaggtggcccagatcctgaggaagaga
ggcgtgggcatcatgtctgtgggcttgcaggactttgacagggcagaactggaggggata
gggcctgtagtgcttgtgtctgacctgcagggagaagatggagtcaggcagctaatgcag
gatgtgaatatgttcatccaggggagtccaaagcctccacgggtcatgaccgacgtagcg
agggacgctgtagaagaatgtccaactcccgttccagccgacctggtgttccttgttgaa
gactttagcagtgccgggcaacccaatttccagcgagttgtccgtttcttgacgaccact
gtccactctctcaacatccaccctgataccacaagagtcggcttggtcttttacgatgag
aagccacggctggagttttccctggatatgcatcaaagagctgcccaagtctcccgccat
ctggacaggttaactttccgagcaagaagaggaggggcgaaggcaggtgctgctttagat
ttcctgaggagagaagttttcctcccagagaagggcagccggccccatcggggtgcacgg
cagatagctgtggtcatcatggaaagcccttctctagacaatgtgtcgacacctgcttcc
cacctccgcagggcgggggtcaccatctatgcggtgggcatccagcctgcctctgagagt
aaggacctggagaagattgtcacataccctccctggaagcacgccatccgcctagagtcc
tttctgcaactcagtgttgtgggaaacaaacttaaaaagaagctctgccctgagatgttg
agcggaatgcctcctctgatgagctatattccagaaagcacacgacagagcacacaggaa
ggctgcgtgagtgtggagaaggcagacatttatttccttattgatggatctggcagcatc
agacccaacgacttcattgaaatgaaggacttcatgaaggaggtgataaagatgttccac
attgggcccgacagagtacgatttggagtcattcagtactcagacagaattgtaagccag
tttttcctcacccagtatgccagcatggcaggactgagcacagccattgacaacatccag
caggggggaggtggtaccaccactggtaaggccttaagcaaaatggtaccagtcttcgaa
gacactgccagaatcgacgttgcccgatacctcattgtcatcactgatggaaagtctaca
gacccggtggctgaggccgcacagggattgagggacatcggagtcaatatttatgccatt
ggagtaagggatgctaatacgaccgagcttgaggaaatagcaagcaaaaagatgtttttc
atatatgagtttgactccttgaaatccatccaccaggaagtcattcgggacatctgctcc
tcagagaactgtaagagtcagaaagctgacatcatcttcttgattgatggctcagaatcc
attgctcctaaagacttcgaaaagatgaaggacttcatggagaggatggtgaaccagtct
aacatcggtgctgatgaaattcagattggccttctgcagttcagctccactccccgggaa
gaattcaggcttaaccagtacttctccaaggtggacatgtgcagagccatcttgaatgtc
caacagatgagtgatggtacctatactgggaaagccttgaatttcactctgccctttttt
gacagttcaagaggagggagacccagagttcatcagtatttgattgtgatcaccgacggg
gtctccaaggataatgtagctcccccagccaaagccctcagggacagaaacataattatt
tttgctattggggtaggagatgttcaaagagcccagcttttggagatcaccaatgaccag
gacaaagtataccaggaggaaaattttgagtccctgcagagcctggaaaaggaaattctt
tatgaggtctgtagttcccaaggatgcaacatagatctgtctgtaggagttgatacctca
acctcttcagagcgagttcagcaggaacttggaaggttgctgccggagctgatgcaacag
ctggcttttctctctaacatcagctgcgaggctcctggccagatggagccgaggttccgt
tatgtggttccaggctccagcgaccagccagtctttgactctggctttgagaaatacagc
gatgagaccatccagaagttcttggtgcatcagggttctgtgaacaaccatatggatgta
gactttctgcagtccctgggagagactgccatccacctgtctcttgctaaagtgaaggtc
cttttagtgtttacagacggacttgatgaagacctagaaaggctgaggagaacctcggag
ttccttcgcagcagagggctttccggactgctgctcatcggcctgggaggtgctcataaa
ttagaagagctgcaggagctggagtttggcagagggtttgcgtacaggcagcctctgagc
tccagtctgccgtccctcccaagcgtcttactgaagcaactcgacacaattgtggagagg
acatgctgtaacatgtatgccaagtgttatggagacgatggggtcagaggtgatcccggg
agtcgcggggaggagggagagaggggtttggatgggctccccggccatcctggtgaagag
ggagaccacggacaaagaggcccccgaggtcttcctggacttcgaggtgaggaaggatgt
ccaggtgtgagaggacctaagggagcaagaggattttcaggagagaagggcagccccggt
gaggaaggtgttgggggcttggatggagaacagggtgatcgtggagccgcagggtcatct
ggagagaaaggaagcagtggcagtcggggcttgacaggtctgcctggaccagctggacct
cgtggggagcctgggctgaggggagatccgggggatcctggaattgataatttcatccaa
ggccccaagggagaaaagggaaggcgtggacatcagggaagtcctggtttccatggacct
ctgggggaagccggcagtgtgggacctcgggggtcacttggaagacacggcttgccaggg
ttgaagggtgtgctcggagaaaccggcgagctgggctcccgaggagagcctgggcatcca
ggcccacagggacccagaggaaggcaaggaccaccaggatttttcggtcaaaaaggggat
ccgggtacccaggggaatcctgggcctccagggccaagtggctcaaaaggaccagatgga
cccagaggactgaagggagaactcggtcccgcaggacaaagaggcccacagggtcagcaa
gggccaagagggcagcctggtctttctggtccagatggccacggtcacccgggaagaaaa
ggcaggaagggtgaacctggattccctggctatcctggtgtgcaaggagaagatggtaac
ccgggccgtggaggagagaaggggaccaagggaatccgagggaagaggggcaattctgga
tttcctgggcttgctggaactccaggtgaccaaggcccaccaggaaaaatgggcatcaag
ggctcaaaaggcttggcagataggatgccttgtgaaattgttgacttcgtgcgaggaaac
tgcccttgctccacaggtatttccaggtgcccagcattcccaacggaagtggtctttgcc
ttagacatgtccaacgatgtttccccgtcagactttgagaggatgagaaacattttatta
tctctgttgatgaagttggaaatgagcgagagcaactgtcccattggtgcccgagtggcc
attgtttcctataacacgaggacagattacctagtgcgcttctcagaccatcggggaaaa
gctgtccttctgcaggctgtcaggaaaatccctctggaacgctcatctgggtcccggaac
cttggggccaccatgaggtttgtggctaggcacgtattcaaacgtgtacgctcaggcctt
ctggtgaggaaggtggctgtgttcttccaggcgggtaggaactatgacacaacctctgtc
agcacagccacgctggagctccatgctgcggacattgctacagcagttgtgaccttcaca
gaggagcacaacctcccagaggcagggctggtggatggacccaacgaatttcacttgttt
acgtgggagaccgaggtccagcaggatgtggaacgcctggccagctgtactctctgctat
gacaagtgccgaccagccccagggtgccagctgcatgctccccggcctcagacgttggac
atggacttggtgttcctggtggacagctcccagggtgtcagcagggacatataccttggg
gctttgcggctagtagattcagtgctcaaggacctagaggtggctgcgcagcctggcaca
tcctggcacggggcgcgtgcagccctgttgacacacacaaccccaggcttttggcctggt
gtggatcaagcccccgtgcttgagtacttccacctgacctcccacggccaccggacacaa
atgcaaaggcagattcgggaggctgcaagtggcctgctacagggaggccccgccctaggc
cacgccctggagtggacgctggaaaacgtgcttctgacagccgtgctgcctcggaggtca
cgggtcctctatgccatcgtggccagcgagacaagcaactgggacagagagaagctaagg
gctctgtcccaggaggccaagtgcaaaggcatcgcactattcgtgctcgtcgtgggccct
ggagtgggtgcccaggagctggctgagctggccagagtggccagtgcgccctcggagcag
cacctgctacgcctagatggtgtctcagaggcagaggtagcctatgccagcagattcacg
gaggccttcctgaaccttctaaatagtggaataaaccagtatccaccccctgagctcgtt
aaggactgtggaggcccaaaccgtggggacaccttgctgcgtttcttcacttctgccaag
aggttgtccaggagtcagtctggcacatctgctgcctttgcaaatgactcagaagcgctc
aagtcaccaggcatctttctagaggcgaggaaaagcagggtggcgtccgtagctctgcaa
gaagcgctgggaagtcatgggaaggacagggcagacactgaagacattgatcagaaaaca
gcagcaaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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