KEGG   Mus pahari (shrew mouse): 110329518
Entry
110329518         CDS       T05929                                 
Symbol
Parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110329518 (Parn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpah03019]
    110329518 (Parn)
Enzymes [BR:mpah01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     110329518 (Parn)
Messenger RNA biogenesis [BR:mpah03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     110329518 (Parn)
SSDB
Motif
Pfam: CAF1 RNA_bind R3H NCBP3 RRM_1
Other DBs
NCBI-GeneID: 110329518
NCBI-ProteinID: XP_021064825
Ensembl: MGP_PahariEiJ_G0016172
Position
12:complement(9522233..9652659)
AA seq 624 aa
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKH
SMDFLLFQFGLCAFKYDHADSKHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFCSGIPYLNQEEERQLREQLDEKRSQANGAGALAKCPVSIPEDQKKFIDQVIEK
IEDFLPSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDEE
ERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPAD
LNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFP
SYDTASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVSARSKLIEPFFNKLFLMRV
MDIPYLNLEGPDLQPKRDHVLHVTFPKEWRTSDLYQLFSAFGNIQISWIDDTSAFVSLSQ
PEQVQIAVNTSKYAESYRIQTYAEYVGKKQEGKQVKRKWTEDSWKEVDRKRPHTQGPCYH
TNSFTATGGVGKRTPSPDPREAASADRESEEISDSELEQTDSRADPLPEGRKKAKKLKRT
KKELSLAGSVSDSPAVLFEVPDTW
NT seq 1875 nt   +upstreamnt  +downstreamnt
atggagataatccggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggctgacttcttcgccatcgatggggagttttcaggaatcagcgatggaccctcagta
acagcattaacaagtggttttgacaccccagaagagagatatcagaagcttaaaaagcac
tccatggactttctgctgtttcagtttggcctctgtgcttttaagtatgaccatgcagat
tccaagcatgtaacgaagtcatttaacttctatgttttccccaagcctttcagtaggtcc
tcaccagatgtcaaatttgtttgccagagctccagcattgacttcctggcaagccaagga
tttgactttaataaagtgttttgcagtggaattccatatctgaatcaggaagaagaaagg
cagctgagagagcaattggatgaaaaacggtctcaagccaatggggcaggagctctggca
aaatgtcctgtgtcaatccctgaggatcagaagaagtttattgaccaagtaatagagaag
atagaggatttcctaccgagtgaagagaagaggagcctggaacttgacccatgcactggg
ttccaaagaaaacttatttatcagactttgagttggaagtatcctaaaggcattcatgtt
gagacattagagactgacaagaaggaaagacatatagttatcagcaaagtggatgaagaa
gaacgcaaaaggagagagcaggagaagtacacaaaggagcaggaggaactgaatgatgct
gtggggttttcaagagtcatccatgccattgctaattcggggaagctggtggttggacac
aatatgctcttggatgtcatgcacacgattcatcagttctactgccccctgcctgcggat
ctgaatgagtttaaggagatggcaatatgtgtcttccccagactcttggatactaagttg
atggccagcacacagccttttaaggatatcattaacaacacatcccttgcagagttggaa
aagcggttgaaagagacaccttttgaccctcctaaagttgaaagtgcggaaggctttcca
agctatgacacagcttccgagcagcttcatgaggcggggtacgatgcctacatcacagga
ctctgcttcatctccatggcaaattacttaggttctttactcagtcctccaaaaatgtgt
gtgtctgccagatcaaagctcattgaacccttttttaacaagttatttcttatgagagtc
atggatattccctatttaaacttggaagggccagacttgcagcctaagcgggatcacgtt
ctccacgtgaccttccccaaagagtggagaaccagtgacctgtaccagctcttcagtgcc
ttcggtaacattcagatatcctggattgatgatacatcagccttcgtttctctcagccag
ccagaacaagtacaaattgctgttaataccagcaagtacgcggaaagttatcggatccag
acctacgctgagtatgtaggaaagaagcaggaaggcaagcaggtcaagaggaagtggaca
gaagacagttggaaggaggtggacagaaagcggccgcacacacagggcccctgttaccac
accaacagcttcacagcaaccggcggggttgggaagagaacaccgagtcccgacccacgg
gaagctgcctcagcggacagagaatcagaggagatatctgactcggagcttgagcagaca
gattcccgtgcagaccccctccccgagggaaggaaaaaggccaagaagttaaaaagaacg
aagaaggagctttccttagcaggaagtgtctcagatagccctgccgtgctctttgaagtc
ccggacacatggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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