KEGG   Mus pahari (shrew mouse): 110335821
Entry
110335821         CDS       T05929                                 
Symbol
Col11a2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah04820  Cytoskeleton in muscle cells
mpah04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110335821 (Col11a2)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    110335821 (Col11a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:mpah00536]
    110335821 (Col11a2)
Glycosaminoglycan binding proteins [BR:mpah00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   110335821 (Col11a2)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 110335821
NCBI-ProteinID: XP_021073852
Ensembl: MGP_PahariEiJ_G0020438
Position
18:1944853..1972214
AA seq 1736 aa
MERCSRCHRLLLLLPLVLGLSAARGWAGAPSVDVLRALRFPSLPDGVRRSKGVCPGDAAY
RVARPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVQQLGLELGRPV
RFLYEDQRGRPQASAQPIFRGLSLADGKWHHVAVAVKGQSVTLIVDCKKRVTRPLPRSVH
PVLDTHGVVIFGAHILDDEVFEGDVQELLIVPGVQAAYQSCGQKDLECEREQRDGPQTQK
PHRAQRSPKKEPARLHKPQSQEPQQQPTESLYYDYEPPYYDVMTTGTAPDYQYPTPGEEE
GVLESSPLPFLEEEQTDLQVSPTADSFQAEEYGEGGTDSPAGFYDYTYGYGDDYREETEL
GPALSAETVHSGAVAHGPRGLKGEKGEPAVLEPGMFVEGPPGPEGPAGLAGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGPPGPPGTSLMLPFRFGSSGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGQRGDTGAQGLPGPPGEDGERGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPRGKPGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPTGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGTAGESGPMGERGHPGPPGPPGEQGLPGTS
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGSRGPAGPNGADGPQGPP
GGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGEAGQAGEAGPPGPKGPTGDD
GPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGSTGENGPPGPLGKR
GPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGLAGKPGPDGLRGLPGSVGQQGRP
GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPTGEQGEKGDRGLPGPQGSP
GQKGETGIPGASGPIGPGGPPGLPGPSGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSKLMQDEEAVPTGGAPGSPAGLEEIFGSLDSLREEIEQMRRP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGVPQDGPLKLRGANEDELSPETSP
YVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFTDLGAPTRRGGVLLGPVCFMG
NT seq 5211 nt   +upstreamnt  +downstreamnt
atggagcggtgcagccgctgccaccgcctccttctgctcctacctctggtgctgggtctg
agcgctgcccggggatgggcaggtgctccctctgtggatgtgcttcgtgccctgaggttc
ccctcccttcccgatggtgttcggagatcaaaaggggtctgtccgggtgatgcggcttac
cgtgtggcacggcctgcccagctcagcgcacccacccgccagctcttcccaggaggcttt
cctaaagacttctctctgctgacggttgtccggacccgccctggcctccaggctcccctc
ttgactctatacagcgcccagggagtccagcagctgggcctggagctcggccgccctgtc
cgctttctctatgaggaccagaggggacggccacaagcctccgctcagcctatcttccga
ggcctcagcctagcagatggcaagtggcaccacgtggctgtggctgtgaagggtcagtct
gtcactctcattgtggactgtaagaagcgagtcacccggccccttccccgaagtgtgcat
ccggtgttggacacccacggggtagtgatctttggtgcccacatccttgatgacgaagtc
tttgaaggcgatgttcaggagctcctcattgtcccaggcgtccaagctgcctatcagtct
tgtggacagaaggatctggaatgtgagagagaacagagggacggacctcagactcagaag
cctcacagagcccagaggtctccaaagaaggagccagcaagacttcataagccacagagc
caggagccccagcagcagcccactgagtctctctactatgactacgaacccccctattac
gatgtgatgactacagggacagcccctgattatcagtaccccaccccaggcgaagaggaa
ggagtcctggagtccagccccttgccattccttgaagaggagcagacagatctccaggtc
tccccaaccgctgacagtttccaggcagaggaatatggggagggaggcacagactcccca
gcagggttctacgattacacctatggctatggggatgattaccgtgaggagaccgagctt
ggccctgccctctctgcggagacagttcactcaggagccgttgcccacggaccccggggg
ctaaagggagagaagggagagcctgcagtgctggagcccggtatgtttgtagagggaccc
ccaggcccggaaggcccagcgggattagctggacctcctggcatccaggggaacccaggc
ccggttggagaccccggtgagaggggcccccctggccgagcagggctccctggatcagat
ggaccccctggtcctcccggcacgtctctgatgcttccattccggttcggcagcagtggg
ggtgacaagggccccgtggtggcagcccaggaggcccaggcccaggcgattctgcagcag
gcacggctggcactccgagggccacctggccccatgggatacacgggccgccctggacca
ttgggtcagcctgggagccctggcttgaagggagaatctggagacctgggcccacagggc
cccagaggacctcagggcctcacaggccctcctggcaaggctggacgaaggggccgagca
ggtgcagatggagcccgtgggatgcccggagagcctggcgtgaagggtgaccgaggtttc
gacggacttccagggctacctggcgagaagggacaaaggggtgatacaggtgctcagggc
cttcctgggcctcctggtgaggatggagaaaggggtgacgatggagagattgggccacgg
gggctgcctggagagtcgggacctagaggactcctcggccctaaaggtccccctggtatt
cctggacccccgggagtccgaggcatggacggtccccatggccccaaagggagcttggga
cctcaaggagagccaggacctcctggacaacagggcactcctgggacccagggcctcccc
ggacctcagggtgctatcggtcctcatggagagaagggtcctcgtgggaaaccaggcctc
cctggcatgcctggatcagatggactcccgggtcacccagggaaggaaggtccccctgga
accaaagggaaccagggcccctccggaccacagggtcctctaggatacccaggccctcga
ggcgtcaagggagtggacggaattcggggcctgaagggccacaagggtgaaaagggcgag
gatggctttcctgggttcaaaggtgacataggagtgaaaggagacaggggcgaggttgga
gtccctggttccaggggcgaagacggccctgaagggccgaaagggcgcactggacctaca
ggagaccccgggcccactgggctcatgggcgagaagggcaagctaggcgttcctggtctg
cctggctaccctggacgccagggtcccaaggggtctctggggttccctggttttcctgga
gccagtggagagaagggagctcggggcctgtctgggaaatcaggacctcggggagaacgg
ggccccacgggtccaagaggtcagcggggacctcgaggtgccactgggaaatctggagct
aagggaacatcaggtggtgacggtccccacgggccacccggagagaggggtcttcctgga
ccgcaaggccccaatggatttcctggccccaaaggccctccgggccctgcagggaaggat
gggctgccgggacaccctggccagaggggagaagtgggattccaaggaaagactggcccc
ccaggcccgccaggagtggtgggacctcagggaacagctggagaaagcggtcccatgggg
gagagaggtcaccctggccccccaggacctcctggagagcaaggactgcctggaacatct
gggaaggaagggaccaagggtgaccctggtccccctggggccccagggaaggatggtcct
gctggtctgagaggtttcccaggagaacgaggcctcccgggcactgctggcggacccggc
ttgaagggaaatgaaggtccagccggccctcctggccccgcaggctctcctggggagcga
ggtgcagcaggatcagggggccccattggtcccccaggacgtccaggcccacagggtccg
cctggagcagcaggagaaaaaggcgtgccgggcgagaaaggccctattggtcccactggt
cgtgatggggtgcagggccccgtggggcttcctggtcccgcaggacccccaggcgtggct
ggagaggatggagacaagggtgaggtgggagaccctggacagaagggaaccaaaggaaac
aagggtgaacatggccctcctggacctcctggtcccatcggtcctgtggggcaacctgga
gctgcgggagctgatggtgagcccggagctcggggaccccagggacactttggagccaaa
ggtgatgaaggaacaagagggttcaatggacccccgggacccatcggcctacagggcctg
ccaggaccctctggggagaagggagaaacaggagatgtggggcctatgggaccccctggc
cctccaggatctcgaggccccgctggacccaatggtgctgatggcccacaaggtccccct
ggaggtgttggaaacttgggtccccctggagagaagggtgaaccaggggagtcagggtct
ccaggtgtccagggcgagccgggtgtcaagggtccacgtggagagcgtggggagaaagga
gaggctgggcaggcgggagaggctgggccaccagggcccaaaggccctacaggcgacgat
ggccccaaggggaaccctggtcctgtcggctttcccggggaccctggcccccctggagaa
gctggcccacggggccaggatggtgctaagggagaccgaggcgaggatggcgagccagga
cagcctggatcccctggttccaccggggagaacgggccccctggaccccttggaaagcgg
ggacctgctggcactcctggtccagagggacggcaaggagagaagggagctaagggggac
cctggtgctgtgggggccccgggaaagacaggccctgtgggtcctgcaggcttagcagga
aaacccggccccgatggtcttcgggggctcccgggctcggtgggtcagcaaggccgccct
ggagccacaggccaggctgggcccccgggtcctgtgggacccccagggcttcctggcctc
cggggtgatgctggagccaagggagagaagggccacccaggtctcatcggactgattggg
ccgaccggagagcaaggcgagaagggcgaccgtggcctccctggacctcagggctcaccc
ggacagaagggagagacgggtatcccaggagcatctggccccatcggtcctggagggccc
cccggcctgcctggaccctctggccccaaaggagctaaaggagccacaggcccggctgga
cccaagggagagaagggtgtccagggccctccaggacatccgggccccccgggcgaggtg
atccagccactgcccatccagatgcccaagaagacccgccgctctgtggatggaagcaaa
ctgatgcaggatgaggaggctgtgcccactggcggtgccccgggcagtcctgcggggctg
gaggagatctttggctccctggactctctgcgggaggagatcgagcagatgaggaggccg
acggggacccaggacagccctgctcgcacctgccaggacttgaagctgtgccaccccgag
cttcctgatggagagtactgggttgaccccaaccagggctgtgctcgggatgccttccgg
gtgttctgcaacttcacagcaggaggggagacgtgtgtcacgcccagggatgacgtcaca
cagttctcctacgtggactccgagggctccccagtgggtgtggtccagctcaccttcctg
cggctgctcagcgtttctgcccaccaggatgtctcctacccttgctctggagtaccccag
gatggtcccctgaaactccgaggggccaacgaggatgagctgagccctgagaccagccct
tacgtcaaggagttcagagatggctgtcagacccagcaaggccggacggtgttggaggtg
cgcacgcctgtactggagcagctgcccgtgctggatgcttccttcacagacctgggggcc
cccacaagacggggaggggtgcttctggggcctgtctgcttcatgggctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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