KEGG T04601: BO218

Microbacterium paludicola: BO218_05545

Entry

BO218_05545       CDS       T04601

Name

(GenBank) ABC transporter

K03701

excinuclease ABC subunit A

Organism

mpal Microbacterium paludicola

Pathway

mpal03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:mpal00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BO218_05545
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mpal03400]
    BO218_05545
DNA repair and recombination proteins [BR:mpal03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BO218_05545
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BO218_05545

SSDB

Motif

Pfam:

ABC_tran UvrA_DNA-bind AAA_21 nSTAND1 AAA_16 SMC_N AAA_29 DnaJ_CXXCXGXG NACHT Anti-TRAP DUF5351

Other DBs

NCBI-ProteinID:

APF33721

Position

1154399..1156972

AA seq 857 aa
MSGDRRTTPDAFVRVRGANENNLRNVDVDVPRDAIVAFTGVSGSGKSSLAFGTIFTEAQR
RYLESVAPYARRLIQQGHNPHVESITGLPPAVALQQRRGAPSSRSSVGTVTTLSNSLRML
FSRAGTFPDGFTDRLDSDAFSPNTAAGACPECHGIGVAHTVTEETLVPDPSLSIRDGAIA
AWPGAWQAKNLRDITIALGYDVDRPWRDLDPADREWILFTDEQPIVEIAPQRDRVAKPYK
GMFWSAKKYVFHTLADSNSAKMRERVLRFVRTGICPLCGGSGLRREALAVTFAGRTIAEL
NALPMSELADILRPTTELTDAAPALTTSSSGERTDVAVAITTDLVARIEVLIDLGLGYLG
LGRVTTTLSPGEMQRLRLATQLRSGLFGVVYVLDEPSAGLHPADAEPLLDVLEQLAASGN
SVFVVEHNMDVVRGADWIVDVGPGAGEGGGEVLYSGAVDGLAEVTASVTRPFLFPGTEGG
AVESRFLRSPTDWLTLEGASLHNLANVDAAFPLGTFVAVTGVSGSGKSSLVGGVLHDVVR
RHLRGDETADQSHDETTDATEPGEAGPVEALPDGQAEVPAVRAVTGLDHIDRLVRVDQKP
IGRTPRSNLATYTGLFDAVRAVFAGTDLAHERGYTAGRFSFNVAGGRCETCLGEGYVSVE
LLFLPGSYGKCPTCDGARYNAETLEVTYRGKNIADVLALTVDDAAGFLEPVPAASRSLRT
LRDVGLGYLRLGQPATELSGGEAQRIKLATELQRARRGHTLYLLDEPTTGLHPADVRLLL
AQLHTLVDAGNTVVAVEHDMDVVASADWVIDLGPSGGDAGGRIMAAAAPAELVRHPSSRM
APYLARVLANVISAPAE

NT seq 2574 nt +upstreamnt +downstreamnt
atgtccggagaccgccgcacgacccccgatgccttcgtccgtgtgcgcggagcgaacgag
aacaacctccggaacgtcgacgtcgacgttccgcgcgacgcgatcgtcgcgttcaccggg
gtgtcgggctcaggcaagtcgtcgctcgcgttcgggacgatcttcactgaggcgcaacgc
aggtatctcgagtccgtggccccttacgcccggcgcttgatccagcagggccacaatccg
cacgtcgagtcgatcacggggcttccgccggccgtcgccctgcagcagcgtcgcggtgcg
cccagctcgcgctcgagcgtcggcaccgtgacgacgctgtcgaactcgctgcggatgctg
ttctcgcgcgccggcacgttccccgacgggttcaccgaccggctcgactccgacgccttc
tcccccaacaccgccgccggcgcgtgcccggagtgccacggcatcggcgtcgcgcacacg
gtcaccgaggagaccctcgtgcccgatccctccctcagcatccgcgacggcgcgatcgcc
gcgtggccgggcgcgtggcaggcgaagaacctccgcgacatcaccatcgccctcggctac
gacgtcgaccgcccgtggcgcgacctcgaccccgccgaccgcgagtggatcctgttcacc
gacgagcagcccatcgtcgagatcgccccgcagcgcgaccgcgtggccaagccctacaaa
ggcatgttctggagcgcgaagaagtacgtcttccacaccctcgccgattcgaacagcgcg
aagatgcgtgagcgggtgctgcggttcgtccgcacgggcatctgcccgctgtgcggcggg
tcgggtctgcggcgcgaggcgctcgccgtcaccttcgccggccgcaccatcgccgagctg
aacgccctgccgatgagcgagctcgccgacatcctgcgtcccaccacggagctgacggat
gccgcgcccgcgctcacgacgtcatcgtcgggcgagcgcacggatgtcgccgtcgcgatc
accaccgacctcgtcgcccgcatcgaggtgctcatcgacctggggctcggctacctcggg
ctcggtcgcgtgaccaccaccctctcccccggcgagatgcagcgcctgcgcctggcgacg
cagctgcgctcgggcctgttcggggtggtctacgtgctcgacgagccatcggccgggctg
catcccgccgacgccgagccgctgctcgatgtgctggagcagctggcggcatcggggaac
tcggtgttcgtcgtcgagcacaacatggacgtcgtccgaggtgcggactggatcgtcgat
gtcggccccggagcgggcgagggcggcggcgaggtgctctatagcggagccgtcgatggg
ctcgccgaggtcaccgcatcagtgacgcggcccttcttgttccccggcaccgagggtggc
gccgtggagtcgcgcttcttgcgctcccccaccgactggctgacgctcgagggcgcgtcg
ctgcacaacctcgcgaacgtcgacgcggcgttcccgctcgggacgttcgtcgcggtcacg
ggggtgtcggggtcgggcaagtcgtcgctcgtcggcggagtgctccacgacgtggtgcgg
cgtcatctgcgcggggatgagacggcggaccagtcgcacgacgagacgacggatgccaca
gagccgggcgaggcgggcccggtcgaggcgctgccggacgggcaggccgaggtccccgcg
gtgcgagcggtcaccggcctcgatcacatcgaccgtctggtgcgcgttgatcagaagccg
atcggacgtacgccgcgctcgaacctggcgacgtacacgggcctgttcgatgcggtgcgc
gcggtcttcgccggcaccgacctcgcacacgagcgcgggtacaccgccggccgcttctcg
ttcaacgtcgcgggaggccgctgcgagacctgcctcggcgagggttacgtctcggtcgag
ctgctgttcctgcccggcagctacggaaagtgcccgacgtgcgacggcgctcggtacaac
gccgagacgctcgaggtcacctaccgcggcaagaacatcgccgacgtgctcgccctcacc
gtcgatgacgctgccggcttcctcgagccggtgcccgcggcatcccggagcctgcgcact
ctgcgcgatgtcggcctcggctacctgcgactcggtcagccggccaccgagctgtcgggc
ggcgaggcccagcgcatcaagctcgcaaccgagctgcagcgcgcccgtcgcggtcacacc
ctctacctgctcgacgagcccaccaccggactgcatcccgccgatgtgcgcctgctgctc
gcgcagctgcacacactcgtggacgccggcaacacggtggtcgcggtcgaacacgacatg
gatgtcgtcgcctcagccgactgggtcatcgacctcggcccgtccggcggcgacgccggc
gggcgcatcatggctgcggccgcgcccgccgagctcgtccggcatccctccagccggatg
gcgccgtatctcgctcgggtcctcgcgaacgtcatttccgcaccagccgaatag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (18)   

Download RDF

DBGET integrated database retrieval system