KEGG   Methanocella paludicola: MCP_2248
Entry
MCP_2248          CDS       T01142                                 
Symbol
truB
Name
(GenBank) probable tRNA pseudouridine synthase B
  KO
K11131  H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
Organism
mpd  Methanocella paludicola
Brite
KEGG Orthology (KO) [BR:mpd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:mpd03009]
    MCP_2248 (truB)
   03032 DNA replication proteins [BR:mpd03032]
    MCP_2248 (truB)
Ribosome biogenesis [BR:mpd03009]
 Eukaryotic type
  Sno RNPs
   Box H/ACA snoRNPs
    MCP_2248 (truB)
 Prokaryotic type
    MCP_2248 (truB)
DNA replication proteins [BR:mpd03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (animals)
    Dyskerin complex
     MCP_2248 (truB)
SSDB
Motif
Pfam: TruB_N TruB_C_2 PUA DKCLD Pus10_C
Other DBs
NCBI-ProteinID: BAI62320
NITE: MCP_2248
UniProt: D1Z0U8
Position
2213482..2214480
AA seq 332 aa
MAPDMLPGERPRELLVKEECKPKGYGKDPYTRSVAELLDKGVINLDKPYGPTSHEVTAWV
KNILHIKRAGHSGTLDPHVTGVLPTMLGDATRLVRTLLLSGKEYVCVMRLHADVPEARVK
AVLSEFTGVIYQRPPLVSAVKRQLRKRTIYYIEFMEMDGRDVLFRVGCEAGTYIRKLCHD
IGEALGVGAHMYELRRTKSGPFKEDETLITLQDLTDAYFYFTQGDEAPLRKIILPMENAL
RNMPRIVVKDSAVDALAEGAPLYVQGICKVDTGIQKGDMVAVFTLIGEVVSMGTAKMTTE
ELMASKEGQAMDTVRVVMEPGIYPKEWKKKLK
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcgcctgatatgttgccgggagaaaggccccgggagctccttgtaaaagaggaatgt
aagccaaagggttatggcaaggacccgtatactcgtagcgtcgctgaattactggataag
ggcgtcatcaatctcgataagccgtatggcccgacgagccacgaggtgaccgcctgggtc
aagaatattttgcatatcaagcgtgccggccatagcggcactctggacccccatgtgacg
ggagtcctgcccacgatgctgggagatgccacccggctggtacgtacattattgttatcg
ggcaaggaatacgtgtgcgtcatgcggttgcacgctgacgtgcccgaggcccgggttaaa
gctgtgttgagcgagttcaccggcgtcatctaccagcggccgcccctggtgagcgccgta
aagcggcagctgcgcaagaggacgatctattatatcgagttcatggagatggacggccgg
gacgtgctgttcagggtcggatgcgaggccggcacctacatccggaagctgtgccacgat
ataggcgaggcgctgggcgtcggggcccatatgtacgagcttcgcaggactaaatccggc
ccgttcaaggaggacgagacgctcatcacgctgcaggacctgacggatgcctacttttat
tttacgcagggcgatgaggcccctctaaggaagatcatcctgccgatggagaacgcgcta
aggaatatgccccgcatcgtcgtgaaggactctgccgtggatgcgctggccgagggcgcc
cccctttatgtccagggcatctgtaaggtcgacacgggcatacagaagggcgacatggtg
gccgtgttcacgctaatcggcgaggtcgtctcaatgggcacggcgaagatgaccaccgag
gagctcatggcctcgaaagagggccaggccatggatacggtgcgcgtcgtcatggagccg
ggcatctatcccaaagagtggaagaaaaaacttaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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