KEGG   Methylobacterium phyllosphaerae: MCBMB27_03793
Entry
MCBMB27_03793     CDS       T04968                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mphy  Methylobacterium phyllosphaerae
Pathway
mphy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mphy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MCBMB27_03793
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mphy03021]
    MCBMB27_03793
   03019 Messenger RNA biogenesis [BR:mphy03019]
    MCBMB27_03793
Transcription machinery [BR:mphy03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     MCBMB27_03793
Messenger RNA biogenesis [BR:mphy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     MCBMB27_03793
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA_25 AAA AAA_14 Spore_III_AA DUF6360
Other DBs
NCBI-ProteinID: APT33084
Position
complement(4041749..4043098)
AA seq 449 aa
MTPNPDALADIETAEPADAPTMPAALEGVREVKLQDLKSKTPTDLTAFAEEVEVENASTM
RKQELMFAILKQLAAKEVEIIGSGTVEVLQDGFGFLRSSDSNYLPGPDDIYISPTQIRRF
GLRTGDTVEGPIRGPKDGERYFALLKVNTINFENPEKIKHKVHFDNLTPLFPTKRFKLEL
DNPTKKDFSPRIIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAQSITLNHPECYLIVLLI
DERPEEVTDMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITR
LGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDE
VIFEEFKGTGNSEIILDRKVSDKRIFPAIDITRSGTRKEELLVPPDSLKKTYVLRRILNP
MGVTDAIEFLLDKLRQTKSNSDFFDSMNT
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgacgccaaaccccgacgccctcgccgacatcgagaccgcggagccggccgatgcgccc
accatgcccgccgccctcgagggcgtccgcgaggtcaagctccaggacctcaagtcgaag
acgcccaccgacctgacggccttcgccgaggaggtcgaggtcgagaacgcctcgaccatg
cggaagcaggagctgatgttcgccatcctgaagcagctcgctgccaaggaggtcgagatc
atcggctcgggcaccgtcgaggtgctgcaggacggcttcggcttcctgcgctcctccgac
tcgaactacctgccgggccccgacgacatctacatctcgccgacccagatccgccgcttc
ggcctgcgcaccggcgacaccgtcgagggcccgatccgcggccccaaggacggcgagcgc
tacttcgcgctcctcaaggtcaacacgatcaacttcgagaacccggagaagatcaagcac
aaggtccacttcgacaacctgacgccgctcttcccgaccaagcggttcaagctcgagctg
gacaacccgaccaagaaggatttctccccgcggatcatcgacatcgtggcgccgatcggc
aagggccagcgcgccctgatcgtggcgccgccgcgcacgggtaagaccgtgctgatgcag
aatatcgcgcagtcgatcacccttaatcaccccgagtgctacctgatcgtgctgctcatc
gacgagcggcccgaggaggtcaccgacatgcagcgctcggtgaagggcgaggtcatcgcc
tcgaccttcgacgagccggccacccgccacgtgcaggtcgccgagatggtgatcgagaag
gccaagcgcctcgtggagcacgggcgcgacgtcgtgatcctgctcgactcgatcacccgc
ctcggccgcgcctacaacaccgtggtgccgtcctccggcaaggtgctgaccggcggtgtc
gacgccaacgccctgcagcggcccaagcgcttcttcggcgcggcccgcaacatcgaggag
ggcggctcgctctcgatcatcgccaccgcgctcatcgacaccggctcgcgcatggacgag
gtgatcttcgaggagttcaagggcaccggcaactccgagatcatcctggaccgcaaggtc
tccgacaagcgcatcttcccggcgatcgacatcacccgctcgggcacccgcaaggaggag
ctgctggtcccgccggattcgctcaagaagacctacgtgctgcgccgcatcctcaacccg
atgggcgtcaccgacgcgatcgagttcctgctcgacaagctgcgccagaccaagagcaac
agcgacttcttcgactcgatgaacacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

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