KEGG   Pseudoduganella plicata: E1742_25890
Entry
E1742_25890       CDS       T06563                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mpli  Pseudoduganella plicata
Pathway
mpli03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mpli00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E1742_25890 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpli03019]
    E1742_25890 (rnr)
   03016 Transfer RNA biogenesis [BR:mpli03016]
    E1742_25890 (rnr)
Enzymes [BR:mpli01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     E1742_25890 (rnr)
Messenger RNA biogenesis [BR:mpli03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     E1742_25890 (rnr)
Transfer RNA biogenesis [BR:mpli03016]
 Prokaryotic type
  tRNA degradation factors
   E1742_25890 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 Rrp44_S1 OB_Dis3
Other DBs
NCBI-ProteinID: QBQ39177
UniProt: A0A4P7BLP5
Position
5864928..5867468
AA seq 846 aa
MNQTTHTIPSREDILALFRSANAPLDLRTLAMSLEVPAESHAVLTRRLAAMERDGQIRSD
SGGFYVLADHSGFVAGRVSAHRDGFGFVIPDEPGDDLFLTEREMQKVLHGDKVLAKVVGF
DRRGRPEGTIVEVVERGNTHIIGRLIKDNGVWIVAPEDKRIGQDILLAGSPGKAKSGQIV
SVELTEQPGRFKQPVGRIVEVLGDMDDPGMEIEIAVRKFGVPHVFSDAAIKQANKLPDVV
RAADLDERVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTNGYRLIVAIADVSHYVKPN
DALDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPAVDRLTLVCDAVITAKGEIKAYQ
FYPAVIHSAARMTYTEVAAILGNTKGPEAAKKPYIVPHLQDLYAVYQALLKARLERGAID
FETTETYIVCNPNGKIEKIVPRSRNDAHKLIEECMLAANVCAADLLLRNKHPGTYRIHAA
PTKEKLTQVREFLKQVGLSLGGGDTPAARDYAELMKKIKERPDASLLQTMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIKAILQGKKYEPKVDDKSVLNTTVSNA
ARRQKLKDKAEGKEPKGARDLTVWDALGVHCSANERRADEASRDVEAWLKCYFMQDKLGE
EFSGIIVGVTTFGIFVQLDQLFVEGLVHITDLGADYFQYDEARHELRGERTGKRYQLTDR
VNVQVVRVDLESRKIDLRLPESETAGMGGGQAPAKKGRGRQKFEDEPAVEESAPRRGRKG
GGGGGRPEKGAAGPSITVRYPAPADNADAPPPRKPRSGGGAPAKRSKTATAASSRPGSTA
KGRKKR
NT seq 2541 nt   +upstreamnt  +downstreamnt
ttgaaccagactacccataccatcccaagccgcgaggacatcctcgcactcttccgcagc
gccaatgcgccgctcgacctgcgcacgcttgccatgtcgctcgaggtccccgccgaatcg
cacgcggtgttgacacggcgcctggccgcgatggaacgcgatggccagatccgctcggac
agcggcggcttctacgtgctggcggatcattccggcttcgtggccgggcgggtcagcgcg
caccgtgacggtttcggcttcgtcattcccgacgaaccgggcgacgacctgttcctgacc
gagcgcgagatgcagaaggtcctgcacggcgacaaggtgctggcgaaagtggtgggcttc
gaccggcgcggccgccccgagggcacgatcgtcgaagtggtcgaacgtggcaacacccat
atcatcggacggctgatcaaggataacggcgtgtggatcgtggcgccggaagacaagcgc
atcggccaggacatcctgctggccggctcgcccggcaaggccaagagcggccagatcgtc
agcgtcgaactgacggagcagccggggcgcttcaagcagcccgtcggccgcatcgtcgaa
gtgctgggcgacatggacgacccgggcatggagatcgaaatcgccgtacgcaagttcggc
gtgccgcacgtgttttccgacgcggcaatcaagcaggccaacaagctgccggacgtggtg
cgtgccgccgacctggacgaacgcgtcgacctgcgcgacgtgccgctggtgacgatcgac
ggcgaggatgcgcgcgacttcgacgatgccgtctactgcgagcccgtcaagatcggccgc
accaacgggtaccgcctgatcgtggcgatcgccgacgtcagccactacgtcaagccgaac
gacgcactggacgccgacgcgctcgagcgcagcacgtcggtctacttcccgcgccgcgtg
attccgatgctgcccgagaagctgtccaacggcctgtgctcgctgaaccccgccgtcgac
cgcctgacgctggtctgcgacgccgtcatcacggccaagggcgagatcaaggcttaccag
ttctatccggccgtgatccattcggccgcgcgcatgacgtacaccgaagtggcggcgata
ctgggcaacacgaaggggccggaagcggcgaagaagccgtacatcgtaccgcacctgcag
gacctgtatgccgtctaccaggcgctgctgaaggcgcgcctggaacggggcgcgatcgat
ttcgagacgacggagacgtacatcgtctgcaacccgaacggcaagatcgagaagatcgtg
ccccgttcgcgcaacgacgcgcacaagctgatcgaggaatgcatgctggcggcgaacgtc
tgcgcggccgatctgctgctgcgtaacaagcacccgggcacgtaccgcatccacgctgcg
ccgaccaaggaaaagctcacgcaggtgcgcgagttccttaagcaggtgggcctgtcgctg
ggcggcggcgatacgccggccgcgcgcgactacgcggagctgatgaagaagatcaaggag
cgcccggatgcgagcctgttgcagacgatgctgctgcgctccatgcagcaggccgtctac
agtccggacaatatcggccacttcggcctggcgtacgaggcgtatgcccacttcaccagc
ccgatccgccgctatcccgacctgctgacgcaccgcgccatcaaggccatcctgcaaggg
aagaagtacgagccgaaggtggacgacaagagcgtactgaatacgaccgtgtcgaatgcg
gcgcggcgccagaagctcaaggacaaggccgagggcaaggaaccgaagggcgcgcgcgac
ctgaccgtgtgggacgcgctgggcgtgcactgctcggccaacgaacgccgcgcggacgaa
gcgtcgcgcgacgtcgaagcctggctgaagtgctacttcatgcaggacaagctgggcgag
gagttcagcggcatcatcgtcggcgtgacgacgttcggcatcttcgtccagctggaccag
ctgttcgtcgaaggcctcgtacacatcaccgacctgggcgccgattacttccagtacgac
gaagcgcgccacgaactgcgcggcgagcgtaccggcaagcgctaccagctgacggaccgc
gtcaacgtccaggtggtgcgtgtcgacctggagtcgcgcaagatcgacctgcgcctgccg
gaaagcgaaacggcaggcatgggcggcggccaggcgccggcgaagaaagggcgcggccgc
cagaagttcgaggatgagccggcggtcgaggaaagtgcgccacgccgaggtcgtaagggc
ggcgggggcggcggccggccggagaagggcgcggcgggtccgtcgatcaccgtgcgctac
ccggccccggcggataacgccgatgcgccgccaccgcgcaagccgcgctcgggcgggggc
gcgccggccaagcggagcaagaccgcgacggccgcttcgtccaggcccggcagcacggcc
aagggcaggaagaagcgataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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