KEGG   Micromonas pusilla: MICPUCDRAFT_31670
Entry
MICPUCDRAFT_31670 CDS       T02696                                 
Symbol
JGI:MicpuC2_31670
Name
(RefSeq) uncharacterized protein
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
mpp  Micromonas pusilla
Pathway
mpp03020  RNA polymerase
mpp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mpp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MICPUCDRAFT_31670 (JGI:MicpuC2_31670)
  09124 Replication and repair
   03420 Nucleotide excision repair
    MICPUCDRAFT_31670 (JGI:MicpuC2_31670)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mpp03021]
    MICPUCDRAFT_31670 (JGI:MicpuC2_31670)
   03400 DNA repair and recombination proteins [BR:mpp03400]
    MICPUCDRAFT_31670 (JGI:MicpuC2_31670)
Enzymes [BR:mpp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     MICPUCDRAFT_31670 (JGI:MicpuC2_31670)
Transcription machinery [BR:mpp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     MICPUCDRAFT_31670 (JGI:MicpuC2_31670)
DNA repair and recombination proteins [BR:mpp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      MICPUCDRAFT_31670 (JGI:MicpuC2_31670)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 9681387
NCBI-ProteinID: XP_003056094
JGI: 31670
UniProt: C1ML14
Position
Unknown
AA seq 1172 aa
MATYSREEEDEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFEL
EPEQQHVPGEEGEGGEKKTYKISFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPL
YVDMEKTVTTVTLDSQKTEEVEKINKVFIGKVPIMLRSEYCSLHDHTDKELTELGECPYD
EGGYFIINGSEKVLIAQEKMSSNHVYVFKKRQPSKYMWVAECRSSPESGARAASACVARM
LHSPGTKMEPGCIRVTLPYIRTDIPLFVVFRALGFVADKDILEHIVYDFNDHDAMELLRP
SIEEALPIQSKKVALDYIGKRGSAVGVSREKRIKYAQDILQKELLPHVGVDEECETRKAY
YLGYIVHRLLLCALGRRNEDDRDHFGNKRMDLAGPLIAILFRQLFRKLTKDVRLYCQRCV
DSGKEIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRR
LNSPIGREGKLAKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMALVSVGSPSSPVLEF
LEEWTMENLEEISPSVISHATKIFVNGVWVGVHRDPADLVRTLRELRRKVDITTEVGIVH
DIRLQELRLYTDYGRCIRPLFIVEDQRMKIKKRNIEMLQEKDITGFTWNDLVSSGCIEYV
DTEEEETTMISMTIEDLVQARLLANNETSVQHMYTHCEIHPSMILGICGSIIPFPDHNQS
PRNTYQSAMGKQAMGMYVTNFQLRMDTLAYVLFYPQKPLVTTRAMEHLHFRELPAGVNVV
VGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKEDLECPSPETTLG
MRHGTYGKLDKDGLICPGTRVSGEDIIIGKTSPLPDDDPSAASNRFTKRDCSTGMKNSET
GIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGV
VPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGKEGDATPFTPVTVENISDMLHQCGYQK
RGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDG
GLRFGEMERDCIISHGAAAFLKERLMDQSDAYRVHVCQTCGLIAVANLKNQTFECCKNPS
ERMKVVQVLLPYACKLLFQELMSMAVAPRLVT
NT seq 3519 nt   +upstreamnt  +downstreamnt
atggcgacgtactcacgagaggaggaggacgaggagatcgggcaagaagacgcgtggacg
gtgatcagctcgtttttcgaggagaaaggcttagcacgtcagcaactggactcgttcaat
gaatttatccaacacgcgatgcaggagattgttgtagatgagatgtcgtctttcgagctc
gagcctgagcagcagcacgtgcccggagaggagggagagggtggtgaaaagaagacatac
aaaatttcttttaagcagatttatctttcaaaacctatggtgaccgaggcagatggcatg
acgagcacgctgtttcccaaagaagcgcgcttaaggaacttgacatactctgcgccgctg
tacgtggacatggagaagacagtcactactgtcactttagactcgcagaagacagaggag
gttgaaaagatcaacaaggtgttcattggaaaagttccgatcatgcttcgcagcgaatac
tgctcactgcacgaccacacggacaaagagctcacagagcttggtgagtgcccgtatgat
gaaggtggatatttcataataaacggaagtgagaaggtattgatagctcaagagaagatg
agcagcaaccacgtgtacgtcttcaagaagaggcagccaagcaaatatatgtgggtggcg
gagtgcaggagcagcccagagagcggtgcacgggcggcaagtgcgtgtgtcgcgaggatg
ttgcacagtccaggtacaaagatggagcctgggtgcatcagagtcacgcttccgtacatt
cgtacagatattcccctgtttgttgtattccgtgcgctcggttttgttgcagataaagat
atactggagcacatcgtgtacgattttaatgatcacgatgcgatggagcttttgagaccc
tctatcgaagaggctttgcctattcagtcgaaaaaagttgccctagactatattggaaaa
cgaggttccgctgttggggtttcgcgagaaaaacgcatcaagtacgctcaggatatttta
caaaaggaacttctgccacacgttggggtcgacgaggagtgcgaaacaaggaaggcatat
tatcttgggtacatcgtgcacagactgctgctgtgcgcactgggaagacgcaacgaagac
gaccgggatcatttcggcaacaagcgcatggatttggccggtcccctgatcgccatacta
ttcagacagctgttccggaagttaaccaaggatgtgcggctctactgtcagcgttgtgtc
gacagcggaaaggaaattcaactgacattggcagtcaaggcgaagactatcacatccgga
ctaaaatactcacttgcaacgggcaactggggtgcgcaaggagcgcaagacatcagagct
ggcgtgtctcaggtcttgaaccgattgtcattttcatcgacgttgagtcaccttcgacgg
cttaactcgccgatcggacgcgagggaaagctggcaaagccacgacagctgcataactca
cactggggaatggtatgtcccgcagagacacctgaagggcaggcgtgcggtcttgtgaaa
aacctctccctcatggcactcgtttctgtaggctcaccaagctcacctgtgcttgagttt
ttggaggagtggacaatggaaaacttagaggagatttcacctagtgttatcagccatgcg
acaaaaatattcgtgaacggtgtgtgggttggtgtgcatcgtgaccctgcggacttggta
agaaccctccgagagctgagacgcaaagtcgacatcacaaccgaggtcggcattgtacac
gacataaggctgcaggagttgcgtctatacactgactacggccgctgcattcgcccgctg
tttatcgttgaggaccagagaatgaagattaaaaaacgaaacatcgaaatgttacaggaa
aaggacatcactggttttacttggaacgatctcgtgtctagcggttgtatcgagtacgtt
gacacagaagaggaggagacgactatgatttcgatgacgatcgaagatctcgttcaagcc
aggttgcttgcaaacaacgagacttctgtgcagcacatgtacacgcactgcgagatccac
ccatccatgatccttggcatttgtggttccattatcccattcccagatcacaaccagtcg
ccgcggaacacgtatcagagcgcaatgggtaagcaagcaatggggatgtatgtcaccaat
tttcaactacgaatggatacgctcgcgtatgttttgttctacccgcagaagccgctcgtg
acgacacgcgcgatggaacatttgcacttcagggaactccctgcaggagtaaacgtcgtt
gtcgggatcatgtgctacaccggatacaaccaagaggacagcgttatcatgaatcagagt
agcattgaccgtggtctatttcgtagcatcttctacaggtcgttcaaggacgaggagaaa
aaacaggggagtttgaccaaagaagatttggagtgtccgagcccagagacgacgctcggg
atgcgacacggaacttacggtaagctcgacaaggacgggttaatctgcccagggacgcga
gtcagcggggaggacataattattggcaaaacttcaccgcttccagatgacgacccgagt
gctgcgtcaaatcggttcacgaagcgtgattgtagcactggtatgaagaacagcgagaca
ggtataatcgaccaggttcttctcacaaccaatgaccaagggctgcgttttgtaaagata
cgcgttcgctcctgccgcactccgcaagttggcgataaattttcatcaagacacgggcaa
aagggcaccattgggatgacatacacgcaggaggacatgccttttacgtgtgaaggggtc
gttcccgatattattgtcaatccgcacgcaattccatcgcgaatgaccatagggcagctc
gttgagtgtttgatgggtaaagttgcggcgatgatgggaaaagaaggggatgcaacaccg
ttcacaccggtgacagttgaaaacatatcagacatgctacaccagtgcggttaccagaaa
cgaggaaacgaggtgatgtacaatggtcacacaggacggaagctcgaggcgaaaatattt
cttggaccaacttactaccagcgtttaaagcatatggttgatgacaagatccactcaaga
ggaagaggaccagttcagatattgacacgccagccaatggagggacgatctagagacgga
gggttgcgtttcggtgagatggaacgtgactgcatcatctctcacggcgctgccgcgttt
ctaaaagagcggttgatggaccagtctgatgcttaccgtgtacacgtgtgccagacttgt
ggcctgatcgcagtggcgaacctaaaaaatcaaactttcgaatgctgcaagaatccgtct
gagcggatgaaggtggtgcaggtgcttctaccgtatgcgtgcaagctactcttccaagag
cttatgtccatggcggtagctcctcggctcgtcacgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (24)   

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