KEGG   Micromonas pusilla: MICPUCDRAFT_40215
Entry
MICPUCDRAFT_40215 CDS       T02696                                 
Symbol
JGI:MicpuC2_40215
Name
(RefSeq) uncharacterized protein
  KO
K08737  DNA mismatch repair protein MSH6
Organism
mpp  Micromonas pusilla
Pathway
mpp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mpp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    MICPUCDRAFT_40215 (JGI:MicpuC2_40215)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mpp03400]
    MICPUCDRAFT_40215 (JGI:MicpuC2_40215)
DNA repair and recombination proteins [BR:mpp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     MICPUCDRAFT_40215 (JGI:MicpuC2_40215)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I PTM_DIR17_Tudor MutS_IV Tudor_5 BAHCC1-like_Tudor
Other DBs
NCBI-GeneID: 9684645
NCBI-ProteinID: XP_003059499
JGI: 40215
UniProt: C1MUI5
Position
Unknown
AA seq 1434 aa
MAPPKTPNDAKGMRSISSFFAPRTNTPKTSAAPESAKPKPDAATSDSPDENRDDRDDEPR
AAKAAKLDATTAPGAVARKETDERAEEEKDEPPLATSTPDAPSTATAAVAEKRAAIVESE
PSPPSAMEMDEEEDDDVKDGRADVGRRIAVFWKKEKRFYAGKVAAFDAKRKKHRVLYDDG
DDEWIAIQKRRVKWDEAAAAEAKGGDDDDDDDDGDESDTAAAASDDDDDDDDDALGAEEG
KRRGGRVTARRAAAAAALKKVGGGGKGGGEASRPSRASAKRKVVLSDSDVDFDGGEGDGD
DGGDDEESDFDVEEEESDDDDDDASDDDASESESYGAEAKKKRAPPPAKKKTSAASPAKR
STAAAPPPATLPPIDASSRNPNAAKSFAERMASATATATAATTTTTDGDGDGAPNAAAAA
LAGPAQYADRDRLQFPWLQPENRRDASGKRPNEPGYDKSTLLLPKDFPKCKDANGKPFTV
SPGQAQWWRFKASHFDSVIMFKMGKFYELFEMDAHVGAADLGLMYMKGEQPHCGFPEKNY
AANAERLARAGHRVVIVEQTETPAQLAERKAAGKTRDNVVMREKVAVLTRGTLVDPEMCE
ASPDAAYCVATFDGGAVATGEGAEDERWVGVCAADCATGRFLLGAWLDDAHLSGLRTALA
TDAIRDAAPDAQTRSCGRDTCADDALEALRDGAYFPTLAGGASAPNAGATCGVKLPDVLA
TLATTAPARERAAGLGAFGVMHAYLSLAMLDRDLIPLGRVEALPGPGDAVAAAWSHGGYV
AMDAAALSGLEVLEGADGGSRGSLLSSLDRCASGPGRRTLRRWVCRPLRSHLAVEERQRA
VRCLRGVASDALRSAQGRMRKAPDLERAVSRLVGAAGGRGRDAANVILYEDAAKARLNGF
LRALEGMRAARDIARDFDDVRAAIADANAPSLRALVTEGGGGDAPPDAIAAVAGAALPEL
TEALAHFERAFDWDGARASGRIEPKPGADAAVDAADARLAAADDALAEWLSDARKKIGGG
KSEVAFVRANKDTHLVEVPDRLSSRVPAGWQREGKRKGFERFDSPELGTMRKERAAAEEA
REDALGKVLSGLVLKFCEEWPRWQRAAEAIACLDALCSLALAAEDLAACCAQTCTPVLLP
PPSTEDAKPSLSASRLTHPTVGAMSGGKAFVPNDTFLGGETPASPPFLLLTGPNMGGKST
LLRQVCLAAVMAHVGADVPAASFTMTAADAIYVRMGAKDNIVGGQSTFMVELSETAAMLR
RATRNSLVALDELGRGTATTDGAAIAHAVVRHLVDLGARSLFSTHYHRLADDRAGDARVR
LAHMGCEVSGDRGAERVTFLYALREGACPKSYGVNVARLAGLPESVLKLAAEKSAEMETE
RRGEGPSSPLPCAGLSDARVMELAKAALRARDDADAIAAVWRDARRAAGLPVPE
NT seq 4305 nt   +upstreamnt  +downstreamnt
atggcgccgccgaagaccccgaacgacgcgaaggggatgcggagcatctcgagcttcttc
gcgccgcggacgaacacgccgaagacgtccgcggcgccggagtcggcgaagccgaagccg
gacgccgcgacgtcggattcgcccgacgagaaccgcgacgatcgcgacgacgagccccgc
gcggcgaaagcggcgaagctcgacgcgacgaccgcgcccggggcggtcgcgaggaaggag
acggacgagcgcgcggaggaggagaaggacgagccgcctctcgcgacgagcacgccggac
gcgccgtcgaccgcgaccgcggcggtcgcggagaagcgcgcggcgatcgtcgaatccgag
ccgtccccgccgagcgcgatggagatggacgaggaggaggacgacgacgtgaaggacggg
agagcggacgtcgggcgacggatcgcggtgttctggaagaaagagaagcgcttctacgcc
gggaaagtcgccgcgttcgacgcgaagagaaagaagcatcgcgtcctgtacgacgacggc
gacgacgagtggatcgcgattcaaaagcgccgcgtgaagtgggacgaagccgccgccgcg
gaggccaagggcggcgacgacgacgacgacgacgacgacggcgacgagagcgacaccgcg
gcggcggcgagcgatgacgacgacgacgacgacgacgacgcgttgggcgcggaagaaggg
aagagacgaggcggccgcgtcaccgcgagacgcgcggcggcggcggcggcgctgaaaaaa
gtcggcggcggaggtaaaggcggaggagaagcgtcgcggccgtcgcgcgcgagcgcgaag
aggaaagtggtcctcagcgacagcgacgtcgacttcgatggaggagaaggagacggcgac
gacggcggcgacgatgaagagagcgacttcgacgtcgaagaggaagagagcgacgacgac
gacgacgacgcgagcgacgacgacgcgagcgagagcgagtcatacggagccgaggcgaag
aagaaacgcgcgccgccgcccgcgaagaagaagacgtccgcggcgtcgccggcgaagagg
tccaccgccgccgcgccgccgccggcgacgctccctccgatcgacgcgtcgtcgcggaac
ccgaacgcggccaaatcgttcgcggagcgcatggcgtcggcgacggcgacggcgacggcg
gcgacgacgacgacgacggacggcgacggcgacggcgcgccgaacgccgccgccgccgcg
ctcgcgggcccggcgcagtacgcggaccgcgaccgccttcagttcccgtggctgcagccg
gagaaccgccgcgacgcgagcgggaaacgcccgaacgaaccggggtacgacaagtccacg
ctgctcctcccgaaagatttcccaaagtgcaaagacgccaacggcaagccgttcacggtg
tcccccggccaagcgcagtggtggcgcttcaaagcgtcgcacttcgacagcgtcatcatg
ttcaagatgggcaagttctacgagctcttcgagatggacgcacacgtcggcgccgcggac
ttgggtctgatgtacatgaagggcgagcagccgcactgcggctttccggagaagaattac
gccgccaacgccgagcgactcgcgcgcgcggggcaccgcgtcgtcatcgtcgagcagacg
gagacccccgcgcagctcgcggagaggaaggctgcggggaagacgagagataacgtcgtc
atgcgcgagaaagtcgcggtgctcacgcgcgggacgctggtcgacccggagatgtgcgag
gcgtcccccgacgcggcgtactgcgtcgcgacgtttgacggaggcgccgtcgcgacgggg
gagggcgccgaggacgagcggtgggtcggcgtctgcgccgcggactgcgcgaccggccgg
ttcctcctcggcgcgtggctcgacgacgcgcacctgtccgggcttcgaaccgcgctcgcg
acagacgcgatccgagacgccgcgcccgacgcgcagacgcggtcgtgcgggagggacacg
tgcgcggacgacgcgctggaggcgctgcgggacggcgcgtacttcccgacgctcgcgggc
ggcgcgagcgctccgaacgccggcgcgacgtgcggcgtcaagctcccggacgtgctcgcg
acgctcgcgacgacggcgcccgcgcgcgaacgcgccgccggtctcggcgcgtttggcgtc
atgcacgcctatctctcgctcgcgatgctcgaccgcgacttgatccctctcgggcgcgtc
gaggcgcttccggggcctggcgacgccgtcgccgccgcgtggtcgcacggagggtacgtc
gccatggacgccgcggcgctgagcggactcgaggtgctggagggcgcggacggcgggtcg
agagggtcgctgctgagctcgctcgatcgatgcgcgtcggggcccgggcggcggacgctg
cggcgatgggtgtgccgtccgctgcggtcgcacctcgcggtcgaggagcggcagcgcgcg
gtgcgatgccttcgcggcgtcgcctcggacgcgctgcgaagcgcgcaggggcgcatgcga
aaggcgccggatctcgagcgcgcggtgagcaggctcgtcggcgccgcgggcgggcgaggc
cgcgacgccgcgaacgtgattctgtacgaggacgcggcgaaagcgcgtctgaacgggttt
ctcagagcgctcgaggggatgcgcgcggcgagggacatcgcgcgcgacttcgacgacgtc
cgcgcggcgatcgcggacgcgaacgcgccgtcgctgcgcgcgctcgtgaccgagggcggc
ggcggggacgcgccgccggacgccatcgccgccgtcgcgggcgcggcgttgccagagctc
acggaggcgctcgcgcacttcgagcgcgcgttcgattgggacggcgcgcgcgcgagcggg
cggatcgagccgaagcccggcgcggacgcggccgttgacgccgcggacgcgaggctcgcg
gccgcggacgacgcgctcgcggagtggctgtcggacgcgcgtaagaaaatcggcggcggg
aagagcgaagtcgcgttcgtgcgcgcgaacaaagacacgcacttggtcgaggttccggat
cgtctgtcctcgagggtcccggcggggtggcagcgggaaggaaaacgtaaagggttcgag
cgtttcgactcccccgagctcgggacgatgcggaaagagcgcgccgccgcggaggaggcg
agagaggacgcgctcgggaaggttctctccgggctcgtgttgaaattttgcgaggagtgg
ccgcggtggcagcgcgccgcggaagcgatcgcgtgcctcgacgcgctgtgctcgctcgcg
ctcgcggcggaagacctcgcggcgtgctgcgcgcagacgtgcacgccggtgttgctgccg
ccgccgtcgacggaagacgcgaagccgtcgctgagcgcgtcgcggctgacccacccgacg
gtgggcgcgatgagcggagggaaggcgttcgttccgaacgacaccttcttgggcggagaa
acgcccgcatcgccgccgttcctcttactcaccggcccgaacatgggcggcaagagcacg
ctgctgcgacaggtgtgtctcgccgcggtcatggcgcacgtcggcgcggacgtccccgcg
gcgtccttcacgatgaccgccgccgacgcgatttacgttcgcatgggcgccaaggacaac
atcgtcggcgggcagtccacgttcatggtcgagctctcggagaccgcggcgatgctccgc
cgcgcgacgcgcaactccctcgtcgccctggacgagctcggcagaggcaccgcgacgacg
gacggcgccgcgatcgcgcacgcggtcgtgcgccacctcgtcgatctcggcgcgcggtcg
ctgttttcgacgcactaccaccgcctcgcggacgaccgagcgggcgacgcgcgcgtgcgg
ttggcgcacatgggctgcgaagtctccggcgaccgcggcgcggagcgcgtgacgttctta
tacgcgctcagagagggcgcgtgcccgaagagttacggcgtgaacgtcgctcggctcgcg
gggctcccggagagcgtcctgaagctcgccgcggagaagagcgcggagatggagacggag
cgacgcggggaggggccctcatcgccgcttccgtgcgcggggctgagcgacgcgcgggtg
atggagctcgcgaaggcggcgttgcgcgcgagggacgacgcggacgcgatcgcggcggtg
tggagagacgcgaggagggcggcggggttgcccgtcccggagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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