KEGG   Micromonas pusilla: MICPUCDRAFT_50560
Entry
MICPUCDRAFT_50560 CDS       T02696                                 
Symbol
JGI:MicpuC2_50560
Name
(RefSeq) uncharacterized protein
  KO
K10610  DNA damage-binding protein 1
Organism
mpp  Micromonas pusilla
Pathway
mpp03420  Nucleotide excision repair
mpp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mpp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    MICPUCDRAFT_50560 (JGI:MicpuC2_50560)
  09124 Replication and repair
   03420 Nucleotide excision repair
    MICPUCDRAFT_50560 (JGI:MicpuC2_50560)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mpp04121]
    MICPUCDRAFT_50560 (JGI:MicpuC2_50560)
   03400 DNA repair and recombination proteins [BR:mpp03400]
    MICPUCDRAFT_50560 (JGI:MicpuC2_50560)
Ubiquitin system [BR:mpp04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     MICPUCDRAFT_50560 (JGI:MicpuC2_50560)
DNA repair and recombination proteins [BR:mpp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      MICPUCDRAFT_50560 (JGI:MicpuC2_50560)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      MICPUCDRAFT_50560 (JGI:MicpuC2_50560)
SSDB
Motif
Pfam: MMS1_N CPSF_A Allexi_40kDa
Other DBs
NCBI-GeneID: 9680849
NCBI-ProteinID: XP_003055127
JGI: 50560
UniProt: C1MIG7
Position
Unknown
AA seq 1223 aa
MTTAAASPTDVTSGQYNYVVTAQKPTSVTHSVVGNFTHEDELNLVVAKCTRVEIHLLTPQ
GLQAMMDVPIYGRIATMELVRPPFEKKPMLFILTERNMFCVLSYDAAKGELITRAMGDLT
DRVGRPSECGPIGAVDPECRMYGLHLYDGLFKVIPMDQTGQLREAFSVRLEELQVFDVKF
LAGTPKPTIAVLYQDTKEGRHIKTYEVCLKDKDFNPGPWAQNDVESGSRFLIAVPAPLGG
VVVVGEKVIAYLNKETTHGVGDGGGGGGGGGGGMIVKAIAMQSDATIMTYGAVDKDGSRY
LLSDSAGRLHLLVLMHDKTRVRALKLESLGQTSIASSLSYLDNGVVYVGSAYGDSQLVRL
HSTPIPIAGGGGGDGDGGGGGGGEIVPVDSGAVTDAPNYVEVLESFTSLGPIVDFVVVDL
DRHGQGQVVTCSGVHKDGSLRVVRNGVGIHEQAAIELPGVKGCWALKNADDAVSDTFLVV
AFIGETRILAINDKDELDETEFEGFAGDERALACANVDGGYACQVTSGGIRLVDVATGAL
RARWTPEPGERVSVAAANRTQVVVALEGGTLVSVAAGGGGDAMDVDDASPLLRELARVNV
GHEIACLDVTPLADPRAASSEICAVGLWSAEVRVLATATLEELSSAPLTDAEVIPRAVLL
CSFEGIPYLLAGLGDGQLFTFALMGERSGIIGDGKKLSVGTQARSIHWFPYDRVGVPITL
KTFRNKNTTHVFAGSDRPTVIYSQNKKLIYSNVNLREVLHMCAFNCDAFPDSLALASESE
LTIGGIDDIQKLHIRTVPLGEQPRRIAHQPASRTFAVLTSHVSDVTNEESFYVRLFDDVT
FETLFKYRLDVGETDSSIISCSFADDPASYYVVGTAFSLPEEVEPSRGRILVLRADEGRL
SLVAEKEVKGAVYNLNAFNGKLLAGINSKVQLFKWVSRGAGAGAGAGGGAEGGAVAMADG
GGGGGGGGGAPAAATTCELASECSHHGHIVALYVDVRGDFIVVGDLMKSISLLVYKPDEG
VIEERARDFNPNWMTAVCALDDETYLGAENSFNLFTVRKNSDAAADEERSRLDVIGEYHL
GEFVNRFRAGSLVMRLPGDGDGAGLGLGLDASNEAPTQLFGTVNGAIGVVASLPESTHTF
LAALQKAMNKVVSGVGGFSHDAWRSFHNEHRSRLVEARGFVDGDLIESFLDLRPEKASEV
ASVVGVGVEELTKRIEELVRITH
NT seq 3672 nt   +upstreamnt  +downstreamnt
atgacgacggccgcggcgagcccgacggacgtcacgtcggggcagtacaactacgtcgtg
accgcgcagaagccgacgtcggtgacgcactccgtcgtcgggaacttcacgcacgaggac
gagctcaatctcgtcgtcgccaagtgcacgcgcgtggagatccacctcctgacgccgcag
ggcctgcaggcgatgatggacgtcccgatctacggccggatcgcgacgatggagctcgtc
cgcccgccgttcgagaagaagccgatgctcttcatcctcaccgagcggaacatgttctgc
gtcctctcctacgacgcggcgaagggggagctgatcacgcgcgcgatgggggacctcacc
gatcgcgtcgggcgtcctagcgagtgcgggcccatcggcgcggtcgacccggagtgccgg
atgtacggcctgcatctgtacgacggcctgttcaaggtgatccccatggaccagaccggg
cagctgcgagaggcgttcagcgttcgactcgaggagctgcaggtgttcgacgtgaaattc
ctcgcgggcacgccgaagccgacgatcgcggtgttataccaagacacgaaggaggggagg
cacataaagacgtacgaggtgtgcttgaaagacaaggacttcaaccccgggccgtgggcg
cagaacgacgtcgagtccgggagccggttcttgatcgccgtgccggcgccgctcggcggc
gtcgtcgtcgtcggcgagaaggtcatcgcgtatctcaacaaggaaacgacgcacggcgtc
ggcgacggcggcggcggcggcggcggcggcggcggcgggatgatcgtgaaggcgatcgcg
atgcagtccgacgcgacgatcatgacctacggcgccgtggacaaggacgggagccggtac
ttgttgagcgacagcgcggggcggttgcacctgctcgtgttgatgcacgataagacgcga
gtgcgcgcgctgaagctcgagtcgttggggcaaacgtcgatcgcgtcgtcgttgtcgtac
ttggataacggcgtcgtgtacgtcgggagcgcgtacggggactcgcagctcgtgcggttg
cactcgacgccgatcccgatcgcgggcggcggcggcggcgacggcgacggcggcggagga
ggaggaggagagatcgtccccgtcgactccggcgccgtaaccgacgccccgaactacgtc
gaggtcctggagtcgttcacgtcgctcgggccgatcgtcgacttcgtcgtcgtcgacttg
gaccgccacggtcaaggccaggtcgtgacgtgcagcggcgtgcacaaggacgggtccctg
cgggtcgtgcggaacggcgtcggcatccacgagcaggcggcgatcgagctcccgggcgtg
aaagggtgctgggcgctcaaaaacgcggacgacgcggtcagcgacacgttcttagtcgtc
gcgttcatcggcgaaaccaggatactcgcgatcaacgacaaggacgagctcgacgagacg
gagtttgaaggcttcgcgggcgacgagcgggctctcgcgtgcgccaacgtcgacggcggg
tacgcgtgccaagtcacgagcggtgggatccgactcgtggacgtcgccacgggcgcgctg
agagcgcggtggacgccggagcccggcgagcgcgtcagcgtcgcggcggcgaatcggacg
caggtggtcgtcgcgctcgagggcgggacgctcgtgagcgtcgccgccggcggcggcggc
gacgcgatggacgtcgacgacgcgtcgccgctcctgcgcgagctcgcgcgcgtcaacgtt
ggccacgagatcgcgtgcctggacgtcactcccctcgcggacccgcgcgcggcgtcctcg
gagatttgcgccgtcgggttgtggtccgcggaggttcgcgtgctcgcgacggcgacgctc
gaggaactgtcgtcggcgccgttgacggacgcggaggtgatccctcgcgcggtgctcctg
tgctcgttcgaggggatcccgtacctgctcgcgggcttgggcgacggacagctgttcacg
ttcgcgctgatgggcgagcggtcggggatcatcggcgacggcaagaagctctccgtcggg
actcaggcgcgttctatacactggttcccatacgaccgcgttggcgtgccgatcacgctg
aaaacgtttcggaataaaaacacgacgcacgtgttcgcgggcagcgaccgaccgacggtc
atatactcgcagaacaagaagctcatctacagcaacgtgaacttgagggaggtgcttcac
atgtgtgcgttcaactgcgacgcgttcccggactcgctcgcgttggcgtcggagagcgag
ctcacgatcggaggcatcgacgacattcaaaaattgcacattcgcaccgtgccgctgggc
gagcagccgcggcggatcgcgcatcagcccgcgtctcggacgttcgcggtcctgacaagc
cacgtcagcgacgtcacgaacgaggagagcttctacgtgagactcttcgacgacgtcacg
ttcgagacgttgttcaagtatcgcctcgacgtcggcgagacagacagcagcatcatctcg
tgctcgttcgcggacgacccggcgtcgtactacgtcgtcggcaccgcgttctcgctaccg
gaggaggtggagccgtccagagggaggatactcgtcctgagagcggacgaagggcggctg
tctctggtcgcggagaaggaggtgaagggggcggtgtataatctgaacgcgttcaacggg
aagctgctcgcggggatcaacagcaaggtacagctgttcaagtgggtctcgcgaggcgcg
ggcgccggcgcgggggctggtgggggtgctgaggggggtgccgtcgcgatggccgacggc
ggcggcggcggcggcggcggcggcggcgcgccggcggcggcgacgacgtgcgagctcgcg
agcgagtgctcgcaccacgggcacatcgtcgcgttgtacgtcgacgtccgcggggatttc
atcgtcgtcggcgacctcatgaagtccatctcgctcctggtctacaaacccgacgagggc
gtcatcgaggagcgcgcgagggacttcaacccgaactggatgaccgcggtctgcgcgctc
gacgacgagacgtacctcggcgcggagaactcgttcaacctgttcaccgtccgcaaaaac
agcgacgccgccgcggacgaggagcgctcgcgcctcgacgtcatcggggagtaccacctc
ggggagttcgtgaaccgattccgcgcgggttcgctcgtgatgcggctgccgggcgacggc
gacggcgccgggctcgggctcgggctcgacgcgtcgaacgaagccccgacgcagctcttc
ggcacggtgaacggagccatcggcgtcgtcgcgtcgttgccggagtccacgcacacgttc
ctcgcggcgttgcagaaggcgatgaataaagtggttagcggcgtcggcgggttctcgcac
gacgcgtggcggagtttccacaacgagcaccgctcgcggttggtggaagcgcgcggattc
gtggacggggatctgatcgaatcgtttttggatctgagaccggagaaggcgagcgaggtg
gcgagcgtcgtcggcgtcggcgtcgaggagctcacgaagaggatcgaggagctcgtgcgg
attacgcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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