KEGG T06362: DEO27

Mucilaginibacter rubeus: DEO27_001110

Entry

DEO27_001110      CDS       T06362

Symbol

rlmD

Name

(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

K03215

23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]

Organism

mrub Mucilaginibacter rubeus

Brite

KEGG Orthology (KO) [BR:mrub00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:mrub03009]
    DEO27_001110 (rlmD)
Enzymes [BR:mrub01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     DEO27_001110 (rlmD)
Ribosome biogenesis [BR:mrub03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    DEO27_001110 (rlmD)

SSDB

Motif

Pfam:

tRNA_U5-meth_tr Methyltransf_31 TRAM Met_10 Methyltransf_25 MTS Methyltransf_15 PrmA

Other DBs

NCBI-ProteinID:

QEM08671

UniProt:

A0A5C1HU78

Position

complement(263126..264538)

AA seq 470 aa
MSKANKPKFFENVQIIDIAEEGKGVGKADDFVLFVDKAVPGDIADVQVYRSKKNFGEGKI
TELKQASEYRTTAFCEHFGTCGGCKWQHMTYEAQLKFKQKSVVDALSRLAKINVEGIMPI
VPSPADRYYRNKLEFTFSNKRWLYDGENKEDGTLNMNALGFHIPGRFDKILDVNHCYLQA
EPSNSLRNEIRDFTVQQGYTYYDLRNHSGMLRNLVVRTSSTGEIMVIVVFAYAEQSEIDK
LMGHVDARFPEITSLLYIVNQKKNDTIFDQDVIAFKGPEYIHEEMNGIKFRIGPKSFYQT
NSVQALRLYEITRDFAGFKGDELVYDLYTGAGTIANFVAGHVREVVGVEYVPTAIEDAKV
NSAINNITNTKFYAGDMKDVLVADFVAEHGKPDVIITDPPRAGMHPDVVARLMEIEAPKI
VYVSCNAATQARDLLVLKEKYDTVKIQPVDMFPHTQHVENVVLLVLRDWR

NT seq 1413 nt +upstreamnt +downstreamnt
atgagtaaagctaacaaaccaaagttttttgagaacgtacagatcattgatattgccgaa
gaaggcaaaggcgtgggcaaagccgatgattttgtactttttgtagataaggccgtaccc
ggcgacattgccgatgtacaagtgtaccgtagtaagaaaaacttcggcgaaggtaagatc
accgaattaaaacaagcttctgaataccgcaccactgctttctgtgagcactttggcacc
tgcggtggctgcaaatggcagcacatgacctacgaggcacagcttaaattcaaacaaaaa
tcggttgttgacgcgttaagccgtttggctaagatcaacgttgagggcattatgcctatc
gttccctctcctgccgacaggtattaccgcaataaactcgaatttaccttctccaacaaa
cgctggctttacgatggcgaaaacaaggaagatggcacgctgaacatgaacgctctgggt
ttccatatccccggccgttttgataaaatattagatgtaaaccattgctatctgcaagcc
gaaccatctaacagtctgcgtaacgagatccgtgatttcaccgttcagcaaggttatact
tattacgatttgcgcaatcacagcggcatgctccgtaatttggttgtacgcacctcatca
accggcgagatcatggtaatagtagttttcgcttatgcagagcaaagtgagattgataag
ttgatgggccacgttgatgcccgcttcccggaaatcacctcattgctgtacatcgtaaat
cagaaaaagaacgataccatatttgatcaggacgttatagcttttaaagggcctgaatat
attcatgaagaaatgaatggcatcaagttccgcataggtcctaagtcattttatcaaacc
aactcggtacaggcacttcgtctgtatgaaataacccgcgattttgccggtttcaaaggc
gatgaactggtatatgacctttacaccggcgccggtaccatcgccaactttgttgccggt
cacgtacgtgaggttgtgggtgttgaatatgtgccaactgctattgaagatgccaaagtt
aactcggccatcaataatatcaccaataccaaattttacgcgggtgatatgaaagatgta
ctggtggccgatttcgtagccgagcatggcaaaccggatgtgatcatcaccgatcccccg
cgcgcaggtatgcatccggacgttgtggcccgcctcatggaaatagaagcgcctaaaatt
gtatacgtaagctgtaatgctgccactcaagcccgtgatttgctggtattgaaagagaaa
tacgatacggttaaaattcaaccggttgatatgttcccgcatacccagcacgtggagaat
gtggtgttgctggttttgagagattggagataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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