KEGG T02436: MYSTI

Myxococcus stipitatus: MYSTI_00055

Entry

MYSTI_00055       CDS       T02436

Name

(GenBank) hypothetical protein

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

msd Myxococcus stipitatus

Brite

KEGG Orthology (KO) [BR:msd00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:msd03016]
    MYSTI_00055
Enzymes [BR:msd01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     MYSTI_00055
Transfer RNA biogenesis [BR:msd03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    MYSTI_00055
Prokaryotic type
   tRNA splicing ligases
    MYSTI_00055

SSDB

Motif

Pfam:

RtcB DUF6301

Other DBs

NCBI-ProteinID:

AGC41414

UniProt:

L7U4J0

Position

complement(68331..69683)

AA seq 450 aa
MSWKQRLEKVAEGHYVLPKTKSMRVDANLFLSDKLLWGEGPDLPALEDAVFDQVVNAASF
PGVTRVAVTPDCHVGYGVPIGTVVETDGILLPTAAGYDIGCGMVQLQTTLTAEDVADVAK
RRQWIEQVTRRIAVGVGASRVQHQRKVSDKAFADVVRHGAKALGRGSAITERDFIPVEDD
RVDIPDRAYEKRGQLGSLGGGNHFTEMQVDEEGRVWVMLHTGSRGFGWNIAKHFFVEGAA
QLGLKSRSEDFVWLDADSPLGREYWNLHNMAANFAVANRLIIGEAVCAALEDVFGGTASV
YYEISHNLIQKEAGKFVARKGATRAFPAGHPSLKKTTWEGTGHPILIPGSMETGSAILFA
EEGASKSIYSVNHGSGRRLSRGEARRVLKQDVTDARMAESGILLNTRHTPLDESGPCYKN
LEDVLETVEMAGLAKVARRLKPVACIKGAD

NT seq 1353 nt +upstreamnt +downstreamnt
atgagctggaaacaacgattggagaaggtcgccgagggccactacgtcctgccgaagacc
aagagcatgcgggtggacgcgaacctgttcctgtccgacaagctgctctggggtgagggg
cccgacctcccggcgctcgaggacgccgtcttcgaccaggtggtcaacgccgcgtccttc
ccgggcgtcacccgagtcgccgtcaccccggactgccatgtgggctatggcgtccccatc
ggcaccgtggtggagaccgacggcatcctcctgcccaccgccgcgggctacgacatcggc
tgcggcatggtgcaattgcagacgaccctcaccgccgaggacgtggcggacgtcgccaag
cgccgccagtggattgagcaggtgactcgccgcatcgcggtgggcgtgggcgccagccgc
gtgcagcaccagcgcaaggtgtccgacaaggccttcgccgacgtggtgcggcatggcgcc
aaggccctgggccgaggctccgccatcaccgagcgcgacttcatccccgtggaggatgac
cgggtggacatccccgaccgcgcctacgagaagcgcggccagttgggcagcctgggcggc
ggcaaccacttcaccgagatgcaggtggacgaggagggccgcgtctgggtgatgctccac
accggcagccgcggcttcgggtggaacatcgccaagcacttcttcgtggagggcgccgcg
cagctgggcctcaagagtcgcagcgaggacttcgtctggctggacgccgacagcccgctg
ggccgtgagtactggaacctccacaacatggccgccaacttcgccgtggccaaccggctc
atcatcggcgaggccgtgtgcgccgcgctggaggacgtgttcggcggcaccgcgagcgtc
tattacgagatctcccacaacctcatccagaaggaggccgggaagttcgtcgcccgcaag
ggcgccacgcgcgcgttccccgcgggacacccctcgctcaagaagacgacgtgggagggc
accgggcaccccatcctgattcccggctccatggagacgggcagcgccatcctcttcgcg
gaggaaggggcgtccaagtccatctactcggtgaaccacggctccggccgccgcctgtct
cggggcgaggcgcgccgcgtgctcaagcaggacgtcaccgacgcgcgcatggcggagtcc
ggcatcctcctcaacacccgccacaccccgctcgacgagtccggcccctgctacaagaac
ctggaggacgtgctggagacggtggagatggcggggctggccaaggtggcgcgccgcctc
aagcccgtcgcctgtatcaagggcgcggattga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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