KEGG   Myxococcus stipitatus: MYSTI_03740
Entry
MYSTI_03740       CDS       T02436                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
msd  Myxococcus stipitatus
Pathway
msd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MYSTI_03740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msd03019]
    MYSTI_03740
   03016 Transfer RNA biogenesis [BR:msd03016]
    MYSTI_03740
Enzymes [BR:msd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     MYSTI_03740
Messenger RNA biogenesis [BR:msd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MYSTI_03740
Transfer RNA biogenesis [BR:msd03016]
 Prokaryotic type
  tRNA degradation factors
   MYSTI_03740
SSDB
Motif
Pfam: RNB OB_RNB S1 CSD2 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AGC45046
UniProt: L7U821
Position
4738331..4741873
AA seq 1180 aa
MSISSDLLQQILSDADHPLGIKELLRLAGLHPGQQTELKRTLRELVRDGRVVKEGKRFLF
LRPRREGGAPAPSPQSAHPKEAREPRFGGTSFERGRGHFPGRGRAPEARGGRGFDQGRSG
GAGSKRRDEWRERSGQQRGGRGGFDGARDTVEGILHVHRDGFGFVHPVSGEGENIFLPPG
EAQRALDNDRVVVSFSGRPGRYEGRLLRVVDRRRELAVGVYTPHRHYALVIPTDTSLPGP
IRVPYTQMAQEGDLVKVRLGVGADLLDPGKDLFGEVAGSLGKPGTPSPEVLGIAFSQGFS
DEFPPEVMDEADRYAVKVSDEEARGEQRKDLRSMPLVTIDGEDARDFDDAVYVEEQGSGW
RLVVAIADVTHYVRERSALDAEALRRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCM
VADMTFDAQGQRRGYTLYPAVMRSVARCTYNEVQDVLAGKDVPHRNEFKPHFERMMALAR
ALMKMRKERGAIDFDLPEHKVVLGKDGLPERMDKRERKDSHRLIEECMLAANEAVARFFQ
DEGLPTVYRFHGEPDPEKLSTFAALAQAYGFKLTIDDGVSSKELDAFISQLSGHPEQRAL
NQLLLRSMMQAVYTSSKVGHYGLAAEHYLHFTSPIRRYPDLLVHRLLKAHWARQGRKPSV
AMLEREEERLEDMAMQCSDRERAAMQVEREVVSFYAALMMKARVGEEFAATVAAITDFGF
FVELDVEHVEGLVKAETLGPGSKLDKQTHALVYPNGRRVRVGQKLRVRLLSANPTARKID
FEALQFDGEAPLARREGGAHVRRRHDWREDAAAHGKQRAGRPGRGEREAKKGGPVRTWAA
REEPSSPRGRFMREGRREESAPRRSEGEAKQPWSGDKSAKPNREHTGARPAGETHGPKRR
MFIRPEPSPEVEASEVAAPAVQESQDFSAPTAWQEPVGGGSSPHPGFDRLRALAAQSPQG
GKGNRGAPPRPGAGGKPPSKFSPPKQREEQEAEYAPESWQPSVRAEPPAKPPAREPDAAM
RTREDAEPVRSAEVEQPRTPERVASPSVVEVPQAVTSREVTAAPVVEAQTSVPPAEVKQA
SRAKAKRAAPAKKAAARKSVVKKATTSKAAAVKKKAASKKPAPVKPSKKAKTPATQGKKP
KAKPAKVSAPRSEKKPKAKATKTRATGAKARGAKPAARKR
NT seq 3543 nt   +upstreamnt  +downstreamnt
gtgagcatctcttccgaccttcttcagcagattctctccgacgcagaccacccgctgggc
atcaaggagctcctgcgactcgcgggcttgcaccctggccagcagaccgagctcaagcgc
acgctccgtgagctggtgcgcgacggtcgcgtcgtcaaggagggcaagcgcttcttgttc
ctccgcccccggcgggagggaggagcccctgctccctcgccccagtcggcccaccccaag
gaagcgcgcgagcctcgcttcggtggcacgtccttcgagcggggccgtggtcacttccca
ggacgaggccgggctcccgaggctcggggcggccgtggcttcgaccaggggcgctcgggc
ggagcgggctccaagcgccgcgacgagtggcgtgagcgctccgggcagcagcggggcggc
cgcggaggcttcgacggcgcgcgcgacacggtggagggcatcctccacgtccaccgcgac
ggcttcggcttcgtgcatccggtgtcgggagaaggggagaacatcttcctgccgcctgga
gaggcccagcgggcgctcgacaatgaccgggtggtcgtctccttctccggtcgtcccgga
cgctacgaagggcggctcttgcgcgtggtcgaccgccgccgcgagctggcggtgggcgtc
tatacgccgcaccggcactacgcgttggtgattcccacggacacgagcctgccgggtccc
attcgcgtgccctacacgcagatggcgcaggagggcgacctcgtgaaggtgcgcctcggc
gtcggcgcggatctgctcgacccggggaaggacctcttcggcgaggtggcggggtcgctc
ggcaagccgggcacgcccagccccgaggtgctggggattgccttctcgcagggcttctcg
gatgagttcccgccggaggtgatggacgaggcggaccgctacgccgtgaaggtgtcggac
gaggaggctcgcggggagcagcgcaaggacctgcggtcgatgccgctcgtcaccatcgac
ggtgaggacgcgcgcgacttcgacgacgcggtctacgtcgaggagcaggggagcggctgg
cggttggtggtggccatcgcggatgtgacgcactacgtgcgagagcgcagcgcgctcgac
gccgaggccctgcggcgcgccacgtccgtgtacctgccggaccgcgtgctgcccatgctt
ccggagcgactgagcaacggcatctgctcgctgcggccggacgaagaccggctgtgcatg
gtcgcggacatgacgttcgacgcgcagggacagcggcgtgggtacacgctctatcccgcg
gtgatgcgcagcgtcgctcggtgcacgtacaacgaggtgcaggacgtcctcgcgggcaag
gacgtgccgcaccgcaatgagttcaagccgcacttcgagcggatgatggcgctggcacgg
gcgctgatgaagatgcgcaaggagcgaggcgccatcgacttcgacctgcccgagcacaag
gtggtgctgggcaaggacggcctgcccgagcgcatggacaagcgcgagcgcaaggacagc
caccggctcatcgaggagtgcatgctcgccgccaacgaggcggtggctcgcttcttccag
gacgagggcctgccgacggtgtaccggttccacggggagccggacccggagaagctgtcg
accttcgcggccttggcgcaggcgtatggcttcaagctgaccatcgacgacggcgtgtcg
tcgaaggagctggacgcgttcatcagtcagctctcgggacatccggagcagcgggccctg
aatcagctcctgctgcgctcgatgatgcaggcggtgtacacgtcctcgaaggtggggcac
tacggtctcgcggccgagcactacctgcacttcacctcgcccatccggcgatacccggac
ctgctggtgcaccggttgttgaaggcgcactgggcgcggcaggggcgcaagccttccgtg
gcgatgctggagcgggaggaggagcggctcgaggacatggcgatgcagtgctcggatcgc
gagcgcgccgccatgcaggtcgagcgggaggtcgtgtccttctacgcggcgctgatgatg
aaggcgcgggtcggtgaggagttcgccgcgacggtggcggccatcacggacttcggcttc
ttcgtcgagctcgacgtcgagcacgtcgaggggctggtgaaggcggagacgctggggccc
ggctcgaagctggacaagcagacgcacgcgctggtgtacccgaacgggcgtcgtgtgcgc
gtggggcagaagctgcgcgtgcggttgctgtcggcgaatccgaccgcgcggaagatcgac
ttcgaggcgctccagttcgacggcgaggcccccctggcccgtcgcgagggtggggcgcac
gtccgccgccggcacgattggcgggaggacgcggcggcgcacggaaagcagcgcgcgggc
aggccagggcgtggggagcgggaggcgaagaagggcgggccggtgcgcacgtgggccgcg
cgtgaggagccctcgagtccgcgggggcgcttcatgcgagaggggcgccgcgaggagtcc
gctcctcggcgaagcgagggcgaggccaagcagccgtggtcgggtgacaagtccgcgaag
cctaaccgggagcacaccggagcgcggccggcgggggagacacatgggccgaagcggcgc
atgttcatccgtccggagccgagccccgaggtggaggcgagcgaggtggctgctccggcg
gtgcaggagtctcaggacttctccgcgcctacggcctggcaggagccggtggggggcggt
tcgtcaccgcatcctgggtttgatcggctgcgtgcgttggccgcgcagagtccgcagggg
ggcaaggggaaccggggtgcgcctccgcgtcctggggccggagggaagccgccgtcgaag
ttctcgcctcccaagcagagggaagagcaggaggccgagtacgcaccggagtcgtggcag
ccgtccgtgcgagccgagccgccagcgaagccgccggcccgtgagccggacgcggcgatg
cgtactcgtgaggatgcggagccggttcgttcggcggaggtcgagcagccgaggacgccg
gagcgcgtggcgagtccgtcggtggtcgaagtcccgcaggccgtgacgagtcgcgaggtc
acagcggcgccggtggtcgaggcgcagacgtccgttccgccggcggaggtgaagcaggcc
tcacgcgcgaaggcgaagcgtgccgcaccggccaagaaggccgcggcgcggaagagcgtg
gtgaagaaggccacgacctcgaaggcggcggccgtgaagaagaaggccgcgtccaagaag
ccagcacccgtgaagccttccaagaaggccaagactccggccactcagggaaagaagccc
aaggcaaagccggccaaggtttcggcgcctcggagtgagaagaagcccaaggcgaaggcc
acgaagactcgtgcgacgggggccaaggctcgcggcgcgaagcccgcggcgcgaaagcgc
tga

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