KEGG   Mycobacterium shigaense: MSG_03678
Entry
MSG_03678         CDS       T05717                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mshg  Mycobacterium shigaense
Pathway
mshg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mshg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSG_03678 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mshg03021]
    MSG_03678 (rho)
   03019 Messenger RNA biogenesis [BR:mshg03019]
    MSG_03678 (rho)
Transcription machinery [BR:mshg03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     MSG_03678 (rho)
Messenger RNA biogenesis [BR:mshg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     MSG_03678 (rho)
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 NACHT VWA_2 PIP5K
Other DBs
NCBI-ProteinID: BAX93805
UniProt: A0A1Z4ELG5
Position
complement(3929734..3931602)
AA seq 622 aa
MTDTDLFTVGESTDGDQLSKAVTTDTPDVKSASKGSLSTLVLPELRALASQAGVKGTSGM
RKNELIAAIKEIRGQANGTSVSDRPATPNAGDDTKTEAAGAETSTAQGKQDDSATEAPRR
ERRGASREAGSAGRGGDEAESSDARHGGDGRGRNGTPRGEGDDRPARRQDNKSDDRGSDN
DQGGDQQNSGGQQNRGGSNQQDDEGDGRQGRRGRRFRDRRRRGERSGDGGGGGDTELRED
DVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGE
QPNQRQKFNPLVRLDTINGGSIEDAKKRPDFSKLTPLYPNQRLRLETTPDRLTTRVIDLI
MPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVKG
EVIASTFDRPPTDHTAVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRIL
SGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKL
DRKISERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRK
TKTNYEFLVQVSKTTPGSMDND
NT seq 1869 nt   +upstreamnt  +downstreamnt
gtgactgatacggacctcttcacggtgggcgaaagcaccgacggcgaccagctgtcgaaa
gccgtgaccacagacactcccgacgtaaaaagcgcgtcgaagggctccctgtccaccctg
gtgctgcccgaattgcgcgccctggccagccaagccggcgtcaaagggacatcggggatg
cgcaagaacgagctcatcgccgcgatcaaggaaatcaggggacaggccaacggcacttcg
gtaagtgaccgtccagccactccgaacgccggggacgacaccaagaccgaggcggccggc
gccgaaacgtctaccgcgcaagggaaacaggacgattcggccaccgaggcgccgcggcgg
gagcggcgcggcgcgtcccgcgaggcggggtcggccggccgcggtggcgacgaggcggag
tcctcggacgcccgccacggcggcgacgggcgcggccgcaacgggactccgcgtggcgag
ggcgacgatcgcccggccaggcgccaggacaacaaatccgacgaccgcggttcggacaac
gaccagggcggcgaccaacagaattcgggcggccagcagaaccgcggcggctccaaccag
caggacgacgaaggcgatggacggcagggccggcggggacgccggttccgtgaccgcagg
cgccgcggcgaacgctccggtgacggcggtggtggcggcgacaccgaactgcgggaagac
gacgtcgtccagccggtagccggcattcttgacgtcctcgacaattacgcgttcgtccgc
acctccggctacctggccgggccgcacgacgtctacgtgtccatgaacatggtgcgcaag
aacggcctgcgccgcggtgacgcggtgaccggcgccgttcgggtaccgcgcgagggcgag
cagcccaaccagcggcagaagttcaacccgctggtgcgcctggacaccatcaacggtgga
tcgatcgaagacgccaagaagcgtcccgacttcagcaagctgacgccgttgtaccccaac
cagcggttgcgcctggagaccacccccgaccggctgaccacccgggtcatcgacctgatc
atgccgatcggtaagggccagcgtgcgctgatcgtgtcgccgcccaaggcgggtaagaca
acgatcttgcaggacatcgccaacgcgatcaccaagaacaacccggaatgccacctcatg
gtcgtgctcgtcgacgagcggccggaggaggtcaccgacatgacgcgttcggtgaagggc
gaggtcatcgcctcgacgttcgaccggccgcccacggaccacacggcggtcgccgagctg
gccatcgagcgtgccaagcgcctggtcgagcagggcaaagacgtcgtggtgctgctcgac
tcgatcacccgcctgggccgcgcctacaacaacgcgtcgcccgcttcgggccgcatcctg
tccggtggtgtcgactcgaccgcgctctatccgccgaagcgtttcctcggcgctgctcgc
aacatcgaggaaggcgggtcgctgaccatcatcgccacggcgatggtcgagacggggtcc
accggtgacacggtcatcttcgaggagttcaagggaaccggtaacgccgagctcaagctg
gaccgcaagatctcggagcgccgggttttcccggccgtcgacgtcaacccctcgggcacc
cgcaaggacgagctgctgctctcgcccgacgaattcggcatcgtgcacaagctgcgccgc
gtcctgtcgggtctggactctcatcaggccatcgacctgctgatgtcgcagctgcgcaag
acaaagaccaactacgaattcctggtccaggtctcgaagacgacaccggggtcgatggac
aacgactag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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