KEGG   Methanosarcina siciliae C2J: MSSAC_3482
Entry
MSSAC_3482        CDS       T03863                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
msj  Methanosarcina siciliae C2J
Pathway
msj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSSAC_3482
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msj03019]
    MSSAC_3482
   03016 Transfer RNA biogenesis [BR:msj03016]
    MSSAC_3482
Enzymes [BR:msj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     MSSAC_3482
Messenger RNA biogenesis [BR:msj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MSSAC_3482
Transfer RNA biogenesis [BR:msj03016]
 Prokaryotic type
  tRNA degradation factors
   MSSAC_3482
SSDB
Motif
Pfam: RNB dsrm DND1_DSRM
Other DBs
NCBI-ProteinID: AKB38072
UniProt: A0A0E3PT42
Position
4276273..4278048
AA seq 591 aa
MPDILRGITIDNVKTRDMDDAIWVEITENGGWHVVVMISDVSKAVPGHSELDQLAMSRVE
TRYYATGNSPMLPRRFADGKLSLWPGEEKSVLVVDIILDMDLSILETRLLRTVITSEARL
SFSDIPPIISDRGHPQHDIVKLASQLADDLLTQRRNRGALAFYNLRRGLVTNEEGSLRQL
KRREDTIGYVIIQELMILANMAVAEYAVKNDIPILFRNHTARSATPERGDLMKLLESVAV
IPEENIATLRSTTYMMFNRAEYGPVILGHFGLNLGAYTHFTSPIRRYADLVNHQQIRAYI
RNEPLPHSKEELQAIASHINLRRLENDRDKSAYMKKKAYKKAESIVLENRISDASDKDFE
RITKFLIRQGEDCPEAYSDAFRKRSGELPVICAGLLLLQAPDGKRWTELKKALLEEMATA
SHKAVSIFDIAQHIQGWQMPVYDVTETARSKLPVFTARSTILIENKEYRSAAYEDTTKKG
AIQRASVDLLANILGLPAPDLKITIASLQASKEEVTINTSKDPIFALQEYCQAKKFPLPA
YSYETKGPTNKPTFTCTCTFGSLTSTEQAGKKQRAKRLAARSMIYMLVSEN
NT seq 1776 nt   +upstreamnt  +downstreamnt
atgccagatatattaagaggtattacgatcgataacgtgaaaaccagggacatggatgac
gcaatatgggtggaaattacggaaaacggcggctggcacgtcgttgttatgatctcagat
gtttcaaaggcagtccccgggcattcagagcttgatcagcttgcgatgtccagagtcgag
accaggtattatgcaaccggtaacagcccgatgttgccccggcggttcgcagacgggaaa
ctttccctatggccgggagaggagaaatctgtcctcgttgtagatatcatcctcgacatg
gatctgtcgatcctagaaacaaggcttttgaggactgtgataaccagtgaagcccggctc
tctttctctgacatccctcccattatctctgatcgggggcacccgcagcacgatatagtc
aaacttgcaagccagctcgcagacgaccttttgacgcagcgccgtaaccgtggagcgctt
gcattctacaatttgaggcgggggcttgtgacgaatgaggaagggtcactacggcaactg
aaacgcagggaagataccatcggctatgttatcattcaggaactgatgattctcgctaac
atggccgtggcagagtatgcggtcaaaaatgacattcctatccttttccgcaaccatacg
gcccggagcgccactcctgagcgaggtgacttgatgaagctgctcgaaagcgtggctgtt
attcccgaggaaaacatagctaccctcagaagtacaacatatatgatgttcaacagagct
gaatatggccctgtcatcctgggccatttcggactgaacctcggagcgtatacccacttc
acctcgcccatccgaagatatgccgatctcgtaaaccaccaacagatccgagcctacatc
cggaacgaacccctgccccactctaaagaagaacttcaagcaattgcatcgcacatcaac
ctgaggcggcttgaaaacgatagggataaaagcgcgtacatgaagaaaaaggcgtataaa
aaagctgagtcgatcgttctggagaatcggataagcgatgcaagcgataaagacttcgag
cgtatcaccaaattcctgatccgccagggggaggactgcccggaggcctacagtgatgct
tttcggaaacgctctggcgaactgccggtcatctgtgcagggctgctactcctgcaagcc
cctgatggcaaaagatggactgaacttaaaaaagcattgctggaggaaatggcaactgca
tctcacaaagctgtctcgatcttcgacatcgcacaacatatacagggctggcagatgccc
gtatacgacgtgacagaaactgcccggagcaagctgccggtattcactgcccggagcacc
attttaatcgagaacaaagagtaccggtccgccgcatacgaggacacgacaaaaaaaggt
gccattcagcgggcatccgtagacctgctcgcaaatattttaggcttacctgctccggac
ttgaaaattacgatagcaagcttgcaggccagcaaagaagaggtaacaattaacacgtca
aaagacccgatttttgccctgcaggagtactgccaggcaaagaaatttcccttgccagct
tattcatatgagacaaaaggcccgaccaataagccgaccttcacctgtacctgtaccttt
ggctccctgaccagcaccgaacaggcaggaaaaaagcaaagggccaagcggctagcagct
agatcgatgatatacatgttagtatccgagaattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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