KEGG   Methylocella silvestris: Msil_0223
Entry
Msil_0223         CDS       T00802                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
msl  Methylocella silvestris
Pathway
msl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Msil_0223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msl03019]
    Msil_0223
   03009 Ribosome biogenesis [BR:msl03009]
    Msil_0223
Enzymes [BR:msl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Msil_0223
Messenger RNA biogenesis [BR:msl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Msil_0223
Ribosome biogenesis [BR:msl03009]
 Prokaryotic type
  rRNA helicases
   Msil_0223
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 AAA_22
Other DBs
NCBI-ProteinID: ACK49204
UniProt: B8ENW6
Position
complement(247556..249073)
AA seq 505 aa
MPFQSSNPALARALAERNYDQATDVQTAALEPAAAGRDLLVSAQTGSGKTVAYGLAIAED
LFAGAPALGAAGEPLALIITPTRELALQVQRELEWLYHYAGARVISCVGGMEPRRERRDL
AAGAHIVVGTPGRLRDHIERGALIVSRLKAVVLDEADEMLDLGFREDLEFILETTPPERR
TLLFSATLPKGIATLAKRFQKNALRIEVAGKERGHADIEYRAMRVAPNEIEHAVVNVLRM
IDPPGAIVFCNTREAVRHLHAFLVERGFSAALLSGELSQNERNHALQALRDGRARVCVAT
DVAARGIDLPGLALVIHADLPHDAEILQHRSGRTGRAGRKGISIILVPSARKRRAERLLM
EAGLQPSWSGPPTAEEIRRLDHERLLRDPLLDEPIGEEDSEIARALLDERSPEAIAAALA
RLLRARLPAAEEVQDPGEGARNRPLRDGAPQRATARGRRRRLVQARHRLAEKGRSEMAAA
HAVPSWRCDQAGHRRDPNFRTGNLV
NT seq 1518 nt   +upstreamnt  +downstreamnt
ttgcctttccaatcatccaacccggcgctggcgcgcgcgctcgccgaacgcaattacgat
caggcgaccgacgtgcagacggcggcgctggagcccgccgccgccggccgcgacctgctt
gtctcggcgcagacgggttcgggcaagaccgtggcctatggtctcgccatcgccgaggat
cttttcgccggcgccccggcgctcggcgcggccggcgaaccgctcgccctgatcatcacc
ccgacgcgcgagcttgccctgcaggtgcagcgcgaactcgaatggctctatcattacgcc
ggcgcccgcgtgatctcctgcgtcggcggcatggagccgcgacgcgagcggcgggacttg
gccgcgggcgcgcatatcgtcgtcggcacgcccggacggctgcgcgatcacatcgagcgg
ggcgcgctgatcgtttcgcgcctgaaggcggtggtgctcgacgaagccgacgaaatgctc
gatctcggctttcgcgaggatctcgaattcatcctcgaaacgacgccgcccgaacgccgc
accctgttgttttcggcgacccttccaaaaggcatcgcgacgctcgccaagcgctttcag
aagaacgcgctgcgcatcgaggtcgccggcaaggaacgcggccacgccgacatcgaatat
cgggcgatgcgcgtcgcgccgaatgagatcgagcacgctgtcgtcaatgtgctgcgcatg
atcgatccgccgggcgcgatcgtcttctgcaatacccgtgaagcggtgcgccatttgcac
gccttcctggtcgagcgcggcttttccgcggcgctgctttcgggcgaactcagccagaac
gagcgcaaccatgcgttgcaagccttgcgtgatggccgggcgcgagtctgtgtcgcgacc
gacgtcgccgcgcgcggcatcgacctgcccggcctcgcgctggtcattcacgccgatctt
ccgcacgacgccgaaattctgcagcatcgcagcggccgcaccgggcgcgccgggcgaaaa
ggtatcagcatcattcttgtgccctccgcgcgcaagcgacgcgccgagcgcctgctgatg
gaagccggattgcagccaagctggagcggcccgccaaccgcggaggaaatccgccgcctg
gatcacgagcggctgctgcgcgatccgctgctcgacgagccgatcggcgaagaggattcc
gagatcgcccgcgctcttttggacgagcgctcgcctgaggccatcgccgccgccctcgcc
cgcctgttgcgcgcgcgcctgccggcggccgaggaggttcaagatccaggcgaaggcgcc
agaaaccggcctctccgtgatggggccccccaacgggccacagcgcgggggcgaaggcgg
cgtctggttcaagctcgacatcggctcgcagaaaaaggccgatccgaaatggctgctgcc
catgctgtgccgtcgtggcgatgtgaccaagcaggacatcggcgcgatccgaattttcga
acgggaaacctggtttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system