KEGG   Methanosphaera stadtmanae: Msp_1360
Entry
Msp_1360          CDS       T00313                                 
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB (TFIIB)
  KO
K03124  transcription initiation factor TFIIB
Organism
mst  Methanosphaera stadtmanae
Pathway
mst03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mst00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Msp_1360 (tfb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mst03021]
    Msp_1360 (tfb)
Transcription machinery [BR:mst03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     Msp_1360 (tfb)
 Prokaryotic type
  Archaeal type
    TFB
     Msp_1360 (tfb)
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon Ribosomal_S27e Sigma70_r4 Lar_restr_allev DUF3797 LysW-like_globular HTH_Tnp_ISL3 OrfB_Zn_ribbon A2L_zn_ribbon zinc_ribbon_5 Cyclin_C Ribosomal_S27 UPF0181 Auto_anti-p27 Zn_Tnp_IS1595 Trm112p
Other DBs
NCBI-ProteinID: ABC57737
UniProt: Q2NEL6
Position
1530147..1531082
AA seq 311 aa
MKEDVAEMEKKETKCPECGSTKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQR
DKRTRVGAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATE
RNLAFALSELDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRC
KVPRTLDEIADVSRVSKKEVGRTYRFLTRELHIRLPPTSPIDYVPRFASELNLSGVVQSK
AIEIINQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKE
LTEQLDMGVNL
NT seq 936 nt   +upstreamnt  +downstreamnt
atgaaagaagacgttgctgaaatggagaaaaaagaaactaaatgtccagaatgtggttct
acaaaattaataaatgatcatgaacgtggagaagttgtttgtggagcatgtggtcttgta
atagatgataacatagtggatatgggtcctgaatggagagcttttgaccatgaacaaaga
gataaaagaacaagagtaggagcacctatcacatacacaattcacgataaaggtttatcc
accatgattgattggcgtaacaaagacatctatggaagagatatacctgcaagaaacaga
gctcaatggtacagactaagaaaatggcagagaaaaatcagaatcagtggtgctacagaa
agaaaccttgcatttgcattaagtgaacttgatagagattcttcaagattaggtcttcca
agatctgtacgtgaatcagcatcagttgtatatagaaatgctgttgaaaataaactcata
cgtggaagaagtattgaaggagttgtagcagcttcattatatgctgcatgtagaagatgt
aaagttccaagaacacttgatgaaatagctgatgtatctcgtgtaagtaagaaagaagtt
ggtagaacatacagattccttacaagagagttacatattagattaccaccaacatcccct
attgattatgtccctagatttgctagtgaattaaatctatcaggtgttgttcagtctaaa
gctattgaaattattaatcaagcaatggataatggtcttacaagtggaagaggacctact
ggtgttgcagctgctgcattatacattgcaagtgtgttacttggtgaacgtaaaacacaa
cgtgatgttgcagatattgctggtgtaacagaagtaacaatcagaaacagatacaaagaa
ttaacagaacaattagatatgggtgtgaatttataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (17)   
   Pfam (17)   
All databases (39)   

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