KEGG   Methanosarcina siciliae T4/M: MSSIT_0523
Entry
MSSIT_0523        CDS       T03865                                 
Name
(GenBank) Transcription initiation factor B
  KO
K03124  transcription initiation factor TFIIB
Organism
msw  Methanosarcina siciliae T4/M
Pathway
msw03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:msw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    MSSIT_0523
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msw03021]
    MSSIT_0523
Transcription machinery [BR:msw03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     MSSIT_0523
 Prokaryotic type
  Archaeal type
    TFB
     MSSIT_0523
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon OrfB_Zn_ribbon Sigma70_r4 Lar_restr_allev LysW-like_globular RPA_interact_C Zn_Tnp_IS1595 Trm112p Zn_ribbon_SprT HTH_AsnC-type HTH_Tnp_ISL3 A2L_zn_ribbon Methyltransf_13 Ribosomal_S27e Zn-ribbon_8
Other DBs
NCBI-ProteinID: AKB27242
UniProt: A0A0E3P1I5
Position
623182..624195
AA seq 337 aa
MVEVERVRYSDTLEREKIRAMIKARKEKQKEQSFENEKAVCPECGSRNLVHDYERAELVC
GDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq 1014 nt   +upstreamnt  +downstreamnt
atggtagaagtcgaaagagttcgctattcggacactcttgaaagggaaaaaatacgtgcc
atgattaaagctcgcaaagaaaagcaaaaagagcaaagttttgagaacgaaaaggccgtg
tgtccagaatgcggtagcaggaaccttgttcacgattatgagagagctgagctcgtgtgt
ggggactgcggacttgtcatcgatgccgactttgtggatgaaggaccggaatggcgagct
ttcgatcatgatcagcgcatgaagcgttcccgtgtgggtgcgcccatgacatatacaata
cacgacaaagggctttccacaatgattgactggaggaaccgtgattcctacggaaagtct
atctcctccaaaaatcgtgctcagctttatcgtttaagaaaatggcagcgtagaattcgt
gtaagcaacgcaacggaaagaaacctggcttttgccctttccgaactggacagaatggct
tctgctcttggtctgccaagaactgtcagggagactgcagcagttgtctacagaaaagct
gttgacaagaaccttatccgtgggcgcagtattgaaggtgtagccgcagcggctctctat
gcagcctgccgccagtgcagtgtcccgaggacgcttgatgaaatcgaagaggtatcaagg
gttagcagaaaagaaatcggaaggacttaccgtttcatttccagagaacttgccttaaaa
ctcatgccaacttcccctatcgactatgtcccgaggttctgctcagggcttaacctgaaa
ggagaagtccagtcaaagagcgttgagattctcaggcaggcttccgaaaaagaactcaca
agcggaagagggcctacaggagttgccgcagctgcaatttacattgcatccattctctgt
ggggagcggaggactcagcgcgaagtcgcagatgttgccggggttacggaagttaccatc
aggaacaggtataaggagcttgcagaagagttggatatcgaaattatcctctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (24)   

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