KEGG   Mycobacterium tuberculosis CCDC5079: CCDC5079_3638
Entry
CCDC5079_3638     CDS       T01991                                 
Name
(GenBank) RNA polymerase sigma factor SigM
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
mte  Mycobacterium tuberculosis CCDC5079
Brite
KEGG Orthology (KO) [BR:mte00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mte03021]
    CCDC5079_3638
Transcription machinery [BR:mte03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CCDC5079_3638
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_ECF Sigma70_r4 HTH_28 Terminase_5 HTH_Tnp_ISL3 DUF746 HTH_23 DUF134 GerE
Other DBs
NCBI-ProteinID: AEJ48827
Position
4387497..4388057
AA seq 186 aa
MGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAML
SAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
VQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLARLLGYLNT
GVNIRR
NT seq 561 nt   +upstreamnt  +downstreamnt
gtgggtttcgggggccgtcacgagcgcagcgacgccgagctgctggccgcccatgtcgcc
ggcgaccggtacgccttcgatcagttgttccgccgtcatcaccgccagctacaccggctc
gcgcggctcaccagccggacctccgaggacgccgacgatgcgctgcaagacgcgatgctg
tcagcgcaccgcggcgccggctcgttccggtacgatgccgccgtcagcagttggttgcac
cgcatcgtggtcaacgcttgcctggaccggctgcgtcgggccaaagcccatccgaccgcc
cctctagaagatgtctatccggtcgcggaccggaccgcgcaggtcgagaccgcgatcgcg
gtgcagcgggcactgatgcggctgcccgtcgagcagcgggccgcggtggtcgccgtggac
atgcagggctattcgatcgccgacaccgcccggatgctgggcgtggccgagggcaccgtc
aagagccgctgcgcccgggcgcgggcccgcctagcgcggctgctgggctatctcaacacc
ggggtgaacatccggcgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (17)   

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