KEGG   Massilia oculi: DIR46_01935
Entry
DIR46_01935       CDS       T05448                                 
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
  KO
K14441  ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
Organism
mtim  Massilia oculi
Brite
KEGG Orthology (KO) [BR:mtim00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:mtim03009]
    DIR46_01935
Enzymes [BR:mtim01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.4  [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
     DIR46_01935
Ribosome biogenesis [BR:mtim03009]
 Prokaryotic type
  ribosomal protein modification factors
   DIR46_01935
SSDB
Motif
Pfam: Radical_SAM UPF0004 TRAM_2 TRAM CLP1_P
Other DBs
NCBI-ProteinID: AWL07585
UniProt: A0A2S2DQC2
Position
complement(444163..445542)
AA seq 459 aa
MVIPTPAAGVTAPKVGFVSLGCPKALVDSEQILTQLRAEGYQTAKSYDGADLVIVNTCGF
IDAAVQESLDAIGEALAENGKVIVTGCLGAKKDAAGDDIITKVHPKVLAVTGPHAVTEVM
ESVHLHLPKPHDPFIDLVPDHGVKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRRI
DEVLLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPIKTHMTQLVEALGQLAR
QHDAWVRLHYVYPYPHVDQAIPFMGDGHVLPYLDIPMQHAHPDVLKRMKRPASGEKNLER
ILNWRKMNPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAQIDRLGCFAYSPVEGATANEL
ANPVPEEVREERRARVMLLQEDISAKRLQAKVGKTLRVLVDEVGPREAIGRSAADAPEID
GVVHIKRPLVPGKQKLAVGQFADVVITKADAHDLWANPV
NT seq 1380 nt   +upstreamnt  +downstreamnt
atcgtcatcccgacgccagccgcgggcgtgaccgcgccgaaggtcggcttcgtctcgctc
ggctgcccgaaggcgctggtcgattcggaacagatcctgacccagctgcgcgccgaaggc
taccagaccgccaagtcctatgacggcgccgacctggtgatcgtcaacacctgcggcttc
atcgacgccgcggtgcaggagtcgctcgacgcgatcggcgaggcgctggccgagaacggc
aaggtgatcgtcaccggctgcctgggcgccaagaaggatgccgcgggcgacgacatcatc
accaaggtgcacccgaaggtgctggccgtgaccggcccgcacgccgtgaccgaggtgatg
gaatcggtgcacctgcacctgccgaagccgcacgaccccttcatcgacctggtgccggac
cacggcgtcaagctcacgcccaagcactacgcctacctgaagatttccgagggctgcaac
caccgctgcagcttctgcatcatcccgtcgatgcgcggcgacctggtgtcgcgccgcatc
gacgaagtcctgctcgaggccgagaacctgttcaaggccggcgtcaaggaactgctggtg
atctcgcaggatacgtccgcctacggcgtcgacgtcaagttccgcaccggcttctggaac
ggccgcccgatcaagacccacatgacccagctggtcgaggcccttggccagctggcgcgc
cagcacgatgcatgggtgcgcctgcactacgtctatccttacccgcacgtcgaccaggcg
atcccgttcatgggcgacggccacgtgctgccttacctcgacatcccgatgcagcacgcg
cacccggatgtgctgaagcgcatgaagcgccccgccagcggcgagaagaacctcgagcgc
atcctcaactggcgcaagatgaacccggacctgacgatccgctcgacgttcatcgccggc
ttcccgggcgagaccgaggccgagttcgaatacctgctggactttttgaaggaagcgcag
atcgaccgcctgggctgcttcgcctattcgccggtagagggcgcgaccgcgaacgagctg
gccaatccggtgccggaagaagtgcgcgaagaacgccgcgcgcgcgtgatgctgctgcaa
gaggacatctcggccaagcgcctgcaggccaaggtcggcaagaccctgcgcgtgctggtc
gacgaagtcggcccgcgcgaagcgatcggccgctcggccgccgatgcgccggaaatcgac
ggcgtggtccacatcaagcgtccgctggtgccgggcaagcagaagctggcggtcgggcag
ttcgccgacgtggtcatcaccaaggcagacgcccacgacctgtgggccaatccggtctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (9)   
   KEGG COMPOUND (9)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (24)   

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