KEGG   Mycobacterium ulcerans: MUL_3413Help
Entry
MUL_3413          CDS       T00435                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase LigB
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mul  Mycobacterium ulcerans
Pathway
mul03030  DNA replication
mul03410  Base excision repair
mul03420  Nucleotide excision repair
mul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MUL_3413 (ligB)
   03410 Base excision repair
    MUL_3413 (ligB)
   03420 Nucleotide excision repair
    MUL_3413 (ligB)
   03430 Mismatch repair
    MUL_3413 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mul03032]
    MUL_3413 (ligB)
   03400 DNA repair and recombination proteins [BR:mul03400]
    MUL_3413 (ligB)
Enzymes [BR:mul01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MUL_3413 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     MUL_3413 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MUL_3413 (ligB)
DNA replication proteins [BR:mul03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MUL_3413 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MUL_3413 (ligB)
DNA repair and recombination proteins [BR:mul03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MUL_3413 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     MUL_3413 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     MUL_3413 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ABL05589
Pasteur: MUL_3413
UniProt: A0PTC0
Position
3781391..3782932
Genome map
AA seq 513 aa AA seqDB search
MLLIDIASTSLNVGGTSSRLAKVARIAEPLRAAAPDPELVAIVVAWLSGELRQRQIGVGW
ATLRSPPAAAGSPALTVTGTDAAFSEIGAVSGKGSAARRRELITRLFAASTETEQAFLVR
LLSGELRQGALAGIMVDAVARAAEVPATAVQRAAMLGGDLPTVAAACLAAGSSGAAGALD
SFTLRVGRPIGPMLAQSAGSITDALERHGGATIFEAKLDGARVQIHRTGDEVTVYTRSLD
DVTARLPEVVQATLALPVSDLVADGEAIALQPDGRPHRFQVTASRFGRSVNVAAAQAKQP
LSVFFSDILHRDGRDLLDAPTTDRLAALDAVVPARHRVDRLTTADAAAATDFLRATLAAG
HEGVMAKSPTAPYLAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIPLGARDAA
TGEFVMLGKTFKSMTDAMLDWQTARFTELAVGGTDGYVVALRPEQVVEVAFDGVQASSRY
PGGLALRFARVVRYRDDKGPADADTIDTVRALY
NT seq 1542 nt NT seq  +upstreamnt  +downstreamnt
gtgctcctcatcgacatagcaagcacttcgcttaatgtgggcggcacctcgtctcggctg
gccaaggtcgcacggattgccgagccgttacgcgcggccgcacccgacccggagctggtc
gcgatcgtcgtggcgtggctctccggcgagctgcggcagcgccagatcggcgtgggctgg
gccacgttgcggtcgccgcccgcggccgcgggtagcccggcgctcaccgtcaccggtacc
gacgcggcgttcagcgagatcggcgcggtgtcgggtaaggggtctgcggcccgccgccgc
gaactcatcactcggttgttcgccgcttcgaccgaaaccgagcaggcctttctggtgcgg
ctgctcagcggcgaactgcgccagggcgcgctggccgggatcatggtcgacgccgtcgcc
agggcggccgaagtccccgctacggcggtgcaacgagccgccatgctgggcggggattta
ccgacggtggcggcggcgtgcctggcggccgggtcatcgggcgcggccggcgcgctggat
tcgttcacgctgcgggtgggcagaccgatcgggccgatgctggcgcagagcgccggcagc
atcaccgatgccctcgaacgccatggcggtgcaacaattttcgaggcaaagttggatggc
gcccgggttcagatccaccgaaccggtgatgaggtcaccgtctatacccgaagcctcgac
gacgtcacggcccgcctgccggaggtggttcaggcaacgctggcgctgccggtcagcgac
cttgttgccgacggcgaggcgattgccctgcaaccagacggccggccgcatcgcttccag
gtcaccgcatcacgatttggccggtcggtgaatgtcgctgccgcccaagccaaacagccg
ctgtcggtgttcttctccgacatcttgcatcgggatggacgcgacctactcgatgcgccg
accaccgaccggctggcagccctggacgccgtggtgccggcccggcaccgagtcgatcgg
ctgaccaccgcagacgcggccgcggcgaccgattttctgcgggcaacactggccgccggc
cacgaaggcgtgatggccaaatcccccaccgcgccctacctggccggccgccgcggcgcc
ggatggctgaaggtcaaaccggtgcacacgctggacctggtggtgctcgcggtggagtgg
gggtcaggacgacgacgcggcaagctgtccaatattcccctcggcgcccgcgatgccgcc
accggcgaattcgtgatgctgggcaagacgttcaaaagcatgaccgatgccatgctggac
tggcagaccgcgcgattcaccgaacttgccgtggggggcaccgacggctatgtggtcgcg
ctgcgccccgagcaggtggtcgaggtggccttcgacggcgtgcaggcgtcctcgcgttat
cccggcgggctggcgttgcgcttcgcccgggtggtgcgctaccgcgacgacaaggggccg
gccgacgcagacaccatcgacaccgtgcgggcgctgtattga

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