KEGG   Meriones unguiculatus (Mongolian gerbil): 110558761
Entry
110558761         CDS       T05884                                 
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Organism
mun  Meriones unguiculatus (Mongolian gerbil)
Pathway
mun03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mun00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110558761 (Mtrex)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mun03019]
    110558761 (Mtrex)
   03041 Spliceosome [BR:mun03041]
    110558761 (Mtrex)
   03009 Ribosome biogenesis [BR:mun03009]
    110558761 (Mtrex)
   03016 Transfer RNA biogenesis [BR:mun03016]
    110558761 (Mtrex)
Messenger RNA biogenesis [BR:mun03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     110558761 (Mtrex)
Spliceosome [BR:mun03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    110558761 (Mtrex)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    110558761 (Mtrex)
Ribosome biogenesis [BR:mun03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    110558761 (Mtrex)
Transfer RNA biogenesis [BR:mun03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    110558761 (Mtrex)
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 110558761
NCBI-ProteinID: XP_060241706
Position
6:complement(87236125..87300973)
AA seq 1042 aa
MADAFGDELFSVFEDDSTSAAGAKKDKGKEKEKWKGPPGSADKAGKRLDAKLQSESSTSG
KNKREIDVEGTDEPIFGKKPRLEDSVNEDLSLADLMPKVKVQSVETVEGCTHEVALPADE
DYVPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPTSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAVDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq 3129 nt   +upstreamnt  +downstreamnt
atggcggacgctttcggggacgagctttttagcgttttcgaggatgattcgaccagcgca
gcaggagccaagaaagacaaaggaaaggagaaagagaaatggaagggaccaccagggtcg
gcggacaaggccgggaaacgactggatgccaaattacaatcagaatcatccactagtggg
aaaaacaagagagagatagatgttgaaggcacagatgaacctatttttggcaagaagccc
aggctagaagactcagttaatgaagacttaagcttggcggacctgatgcccaaagtcaag
gtacagtcagttgaaacagttgaaggctgtacacatgaggttgctcttcctgcagatgag
gattatgtaccacttaaacctcgagttggaaaggcagcaaaggaatacccattcattctt
gatgctttccaaagagaagctattcagtgtgttgataataatcagtctgtgttagtatct
gcccatacatcggcgggaaaaactgtgtgtgctgagtatgctattgcattggctttaagg
gaaaaacagcgtgtaatatttactagcccaattaaggctctgagtaaccagaaataccgt
gaaatgtatgaagagtttcaagatgttggtctgatgactggagatgttactattaatccc
acagcttcttgtcttgttatgactacagagattttgaggagtatgctctatagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtagtatgggaagaaactattattttgcttccagataatgtccactatgtc
tttctttcggctactattccaaatgctcgacagtttgctgaatggatttgccatcttcac
aaacagccctgtcatgtaatttatactgattatcgacccactccattgcaacattacata
tttccagcagggggagatggccttcaccttgtggtcgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgggatgcaggggatttggccaaaggagac
cagaagggacggaaaggaggaacaaaaggtccatcaaatgtgtttaagattgtgaagatg
attatggaaagaaattttcaacctgtaattatcttcagttttagtaagaaagattgtgaa
gcatatgctcttcagatgactaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagttttcaataatgcaattgactgcttgtctgatgaagataaaaagctccctcag
gttgaacacgttctccctctcctgaagcgggggattggcattcaccacggcggtttactt
cctattttgaaggaaactatagaaattctcttttctgagggattgataaaggccttattt
gccacagagacttttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcccgtaaatacgatggaaaggattttagatggatttcctctggtgagtacattcagatg
tctggtcgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagat
gaaaagatgagcccaacgatcggaaaacaactgcttaagggctcagctgatcctctgaat
agtgctttccatctgacctataacatggttctgaacttactacgagtggaagaaatcaat
cctgagtacatgctagaaaaatctttctaccagtttcagcattacagagcaattccagga
gtagtggagaaggtaaagaactcagaagagcagtataataaaatagtaattcccaatgaa
gaaaatgtggtcatctactacaagattagacagcaacttgccaagctgggaaaagagatt
gaagaatatattcataaaccgaaatattgcttaccatttctgcaaccaggtcgtttggta
aaggtgaaaaatgaaggagatgattttggctggggagtggtagtaaatttctcaaaaaag
tcaaatgttaagcctacttctggtgaactggatcccttgtatgtggtggaagtgctcctg
cgctgtagcaaggaaagcttgaaaaattcagctacagaggcagccaagccagcaaagcct
gacgagaagggagagatgcaggttgttccagtcttggtgcatctcctgtctgctatcagc
acagttagactttacatccccaaagaccttcgacccttggacaacagacagagcgtttta
aaatccatacaggaagttcagaagcgttttcctgatggtgttcctttgttagatcccatt
gatgatatgggcattcaagatcaaggactgaaaaaagtcattcaaaaagtagaggctttt
gagcatcgaatgtattcgcatccacttcacaatgatccaaatttggaaacagtgtataca
ctttgtgaaaaaaaagcacagattgcagtagatattaagtctgcaaagagagaactgaag
aaagcaagaactgtactgcaaatggatgagctcaaatgtcgtaagcgcgttctaagacgg
ctaggttttgctacgtcttctgatgtcatagagatgaaaggacgtgtggcttgtgaaata
agcagtgctgacgagctcctcctaacagaaatgatgtttaacgggctcttcaatgacctt
tctgcagagcaggcaaccgcactgttaagctgctttgtgtttcaagagaattctagtgag
atgcccaagttaacagagcagttagctggaccactgcgacaaatgcaggaatgtgctaaa
aggattgcaaaagtttcagcagaagcaaaactggagattgatgaagaaacttacctaagt
tcattcaagcctcacctgatggatgtggtgtatacctgggcaactggggccacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagtataattcgttgtatgaggcgcctg
gaagaactgcttcggcagatgtgtcaagcagcaaaagccattggaaacacggagctggag
aacaagtttgctgaaggaatcaccaaaatcaagagggatattgtatttgctgccagcctc
tacttgtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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