KEGG   Musa acuminata (wild Malaysian banana): 103969268
Entry
103969268         CDS       T03447                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
mus  Musa acuminata (wild Malaysian banana)
Pathway
mus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103969268
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mus03041]
    103969268
Enzymes [BR:mus01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103969268
Spliceosome [BR:mus03041]
 Complex C
  Other components
   Step II factors
    103969268
SSDB
Motif
Pfam: OB_NTP_bind HA2_C S1 Helicase_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 AAA_30 AAA_16 ABC_tran TsaE Sigma54_activ_2 T2SSE Flavi_DEAD PhoH
Other DBs
NCBI-GeneID: 103969268
NCBI-ProteinID: XP_009381035
UniProt: A0A804L0I0
Position
10:complement(29882103..29889072)
AA seq 1181 aa
MATAAEVAPGDEGLKKLEYLSLVSKVCTELESHIGCGDKVLAEFITELGRDSETVDDFDA
KLKANGAEMPDYFVRTLLTIIHAILPPRSKASMPLPSDPQSQSKKKASAFPALSRPDDPE
RAKDLRLEMEKDADRKSDAGRRQHDRERDRERDERRRSDRDRDRDRHRGEERDRYRDRGR
DRDRDRDGDYRRDKYSDSRGHNVDEDDEDSKTRRNPNPNRRISDEPELYEVYKGRISRVM
DTGCFVQLTDLRGKEGLVHVSQIASRRIANAKDVVKRDQEVYVKVISVSGQKLSLSMRDV
DQKTGKDLLPMKKSSEDEAYRANPASRDGGLTRRLGLSGITIVEEDVEGSSRRPLKRMSS
PERWEAKQLVASGVLGVRDYPMFDDDGDGLLYQEEGAEEEIEIELNEDEPAFLQGQSRFS
IDMSPVKIFKNPEGSLSRAAALQSALIKERRELREQQQRTMLDSIPKDLNRPWEDPMPET
GERHLAQELRGVGLSAYEMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQA
VHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCR
LGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILVDESLSQYSVIMLDEAHERTIHTDVL
FGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYL
DAALITVLQIHLTEPEGDVLLFLTGQEEIDHACQSLYERMKGLGKNVPELIILPVYSALP
SEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKLGLDSLVIT
PISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGATVLNMKAMGI
NDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASV
DLGCSEEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNF
SGPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVSAGKNFTKIRKAITAGFFFHAAR
KDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELA
PRFYKGADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 3546 nt   +upstreamnt  +downstreamnt
atggctacggccgcggaggtggcgccgggggacgagggcctgaagaagctcgagtacctg
tctctggtctccaaggtgtgcacggagctggagtcccacatcggctgcggcgacaaggtc
ctggctgagttcatcaccgagctcggccgcgactccgagaccgtcgacgatttcgacgcc
aagctcaaggcgaacggcgccgagatgcccgactacttcgtccgaaccctcctcaccatc
atccacgccatcctccctcccagatccaaggctagcatgccgcttccctccgatccccag
tcccagtccaaaaagaaggcgtccgccttccccgctctctcccgccccgacgaccccgag
cgcgccaaggatctccggttggagatggagaaggacgccgaccgcaaatcggatgccgga
cgcaggcaacatgatagggaacgtgaccgagagcgggatgagaggcgcagaagtgatcgg
gacagagacagagacagacacagaggcgaggagagggatagatatagagacagaggcaga
gatagagatagagatagagatggggattatagaagggataaatacagcgattcaaggggc
cacaatgtggatgaagatgacgaagacagcaagactaggagaaaccctaaccctaaccga
agaatttctgatgagccagagctttatgaggtctacaagggaagaatttcgcgtgtcatg
gacactggttgcttcgtgcagctgaccgacttgagaggaaaggaaggactggttcatgtc
tcccagattgccagcaggagaattgctaatgcgaaggatgtggtgaagcgtgatcaagaa
gtctatgtgaaggtgatttcagtgtcagggcagaagcttagcttgtctatgagggatgta
gatcagaagactggaaaggatctactcccaatgaagaagagctctgaggacgaagcgtat
agggcgaacccagccagtagggatggtggtctgactagaaggttgggtctttcagggatt
acgatagtagaagaagatgtggaaggatcatcaaggcgcccgctcaagcggatgagctcg
cccgagaggtgggaggcaaagcagcttgttgcttctggagttttgggtgtccgggattac
ccaatgtttgatgacgatggagatgggcttttgtatcaggaagagggagctgaggaggag
atagagatcgagcttaacgaggatgagcctgccttcttgcaagggcagagtcgattttcg
atcgacatgtcccctgtcaaaattttcaagaatccggaggggtctttgagcagggctgca
gcacttcagtcagctcttatcaaggaaaggagggagttaagagagcaacagcagaggaca
atgctggattcaattccaaaagatctaaatcgtccttgggaggacccaatgccagaaaca
ggtgagaggcaccttgcgcaggagcttaggggagttgggttgtcagcctatgagatgccc
gagtggaagaaagatgcttatggaaaggctttaacatttgggcagaggtctaagctatcg
atacaggaacaaaggcaaagtcttcctatttacaaattgaaaaaagagctaattcaagct
gtgcatgataatcaggtactggttgtgattggagagacaggttcaggcaagacaacacag
gtgactcagtatctagctgaggcagggtacacaactagaggaaagattggttgcacacaa
cctcgtagggtggcagctatgtcggttgcaaagagggtagcagaagagtttggttgccgt
ctgggtgaggaggttggttatgctattaggtttgaggactgcactgggcctgagacagtg
atcaagtatatgacagatggtatgcttcttagggagattttagttgatgaaagcctctca
cagtactctgtaataatgttggatgaagctcatgaaaggaccattcacactgatgttctt
tttgggttactaaagcaacttgtgaaaaggagaccagaccttcggttaatagtcacctct
gcaacacttgatgcagagaagttctccgggtacttctttaactgtaatatcttcaccatt
cctggtagaactttcccagtggagatactctacaccaagcagccagaaactgattacctg
gatgcagcattgatcactgttcttcagatccacttgacagaacctgaaggagacgtactt
ctatttctgactggccaagaagaaattgatcatgcttgccagtctctgtacgagagaatg
aaaggattagggaagaatgtgcctgagttgataatcttgccagtatacagtgctcttccc
agtgagatgcagtcgaggatttttgaacctgctcctcctggaaagaggaaagtggttgtg
gccactaatattgcagaggcttccttgacaattgatgggatttactatgttgttgatcca
ggttttgcaaaacaaaatgtctacaatccaaagttagggcttgattcactagttatcact
cccatctcacaggcatctgcaaagcagcgagctggtcgtgctgggcgtactggcccagga
aaatgttaccgtctttatacagagagtgcttatcgcaatgaaatgtctccaacgacaatt
ccagaaatccagaggattaatcttggggcgacagttcttaatatgaaggctatgggtata
aatgaccttctgtcttttgattttatggatccaccatcacctcaagcactcatttctgct
atggaacaactatacagtcttggagccttggatgaggaggggctcctgacaaaattgggt
agaaaaatggctgagttccctttggagccaccactttcgaaaatgcttctagctagcgtg
gaccttggatgcagtgaagaaattttgactattatagcaatgattcagaccgggaacatt
ttctacagaccaagagagaaacaagctcaagcagatcagaaaagagcaaaattctttcag
cctgaaggggatcatctaacattgctcgctgtatatgaggcttggaaagctaagaacttt
tctggcccatggtgctttgaaaacttcgtacagtcacgttcacttaggagggcacaggat
gtgaggaaacaacttcttactattatggacaggtataagctggatgttgttagtgctgga
aaaaattttactaagataaggaaggcaattacggcggggttctttttccatgcagcaagg
aaagatccccaggaagggtacaggaccttagttgagaaccagcctgtgtatattcacccc
agcagtgctctatttcaaaggcaaccagactgggttatatatcacgagcttgtaatgacg
actaaggaatacatgagggaagtcacagtagttgaccccaagtggttagtagagttggct
ccaagattctacaagggtgcagatcctacaaaaatgagtaaacgcaagcgacaagagcgt
atcgaaccactttatgaccgatatcatgaacccaactcttggcgtctgagtaagcgccgt
gcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (17)   
   Pfam (17)   
All databases (61)   

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