KEGG   Musa acuminata (wild Malaysian banana): 103977408
Entry
103977408         CDS       T03447                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
mus  Musa acuminata (wild Malaysian banana)
Pathway
mus03020  RNA polymerase
mus03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103977408
  09124 Replication and repair
   03420 Nucleotide excision repair
    103977408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mus03021]
    103977408
   03400 DNA repair and recombination proteins [BR:mus03400]
    103977408
Enzymes [BR:mus01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103977408
Transcription machinery [BR:mus03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     103977408
DNA repair and recombination proteins [BR:mus03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103977408
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 103977408
NCBI-ProteinID: XP_009391176
UniProt: A0A804I6Z0
Position
3:complement(462319..471047)
AA seq 1786 aa
MDMRFPYSPANVAKVGAVQFGILSPEEIRHMSVVQIVHGATTERGKPKLGGLSDPRLGTV
NRRMSCETCKGNMAECPGHFGHLELAKPMFHIGFLKTVLLITRCVCFNCSKILVDEDDPK
FKEALKIRNPKNRLQRIYVACKSKKKCSGGDDIGLRRQQDSRGPTEKSRVGCGARQPIIT
IDGLKMVAEYKDSKRKSDEQEDRLEPSERKQVLSAETVLSVLERISDEDCLLLGLDPKYA
RPDWMILQVLPVPPPPVRPSVMMDSSLRSEDDLTHQLAMIIRHNENLRQQERSGAPAHFI
SELAQVLQFHVATYFDNELPGQPTATHRSGRPIKSICSRLKGKGGRIRGNLMGKRVNFSA
RTVITPDPTINIDELGVPWSIASNLTYPETVTAYNIERLRELVENGPHPPPGTPGANYII
RDDGQRLDLRYVKKSSDRHLELGYKVERHLRDGDYVLFNRQPSLHKMSIMGHRIKLMPHS
TFRLNLCVTTPYNADFDGDEMNMHVPQSLETRAEVIELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITARDTFIEKDVFMNILMWWEDFDGKIPAPAVLKPRPLWTGKQVFNLIIPKQI
NLMKFSGWHAETETGFITPGDTVVRIEKGELLSGTLCRKTLGTSPGSLIHVIWEEVGPDA
ARKFLGHAQWLVNHWLLQNGFSMGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ
FEAEPGRTMMESFENRVNQVLNRARDDAGSSGQKSLSESNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLVDTAVKTSETGYIQRRLVKAMEDIVVTYDGTVRNSLGDVIQFLYGEDGIDAVWIESQ
KLDSLRMRKTEFESVFRYQLDDVHWNPSYLQEEHVEDLKTIPECRDVFDAEVQKLEADRY
QLGTEIATTGDATMHMPVNLKRLIWNAQKTFKIDPRRPSDMHPMEIVDAVDKLQERLKVV
PGDDFLSMEAQRNATLLFGILLRSTLASKRVMKEYRLTREAFEWVIGEIESRFVQSLVSP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKQIKTPSLCVYL
KPEVRHEKEKAKQVQCALEYTTLRSVTHATEIWYDPDPRSTVIEEDVEFVRSYYEMPDED
TASENISAWLLRIELNREMMVDKKLAMADIAEKIDDEFGDDLSCIFNDDNADKLMLRIRI
TNDDAPKGEVQDESDEDDVFMKKIESNMLTEMALRGIPEIKKVFIKSAKNSRFNDEEGFE
QAVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLVEVIEVLGIEAVRRALLDELRAVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVEILLDAAVYSEED
HLRGVTENIMLGQLTPVGTGACALYLNDRMLQQAIELPLPSYMMDGGGFDFGTTPSASPN
YAWASYHEGMMSPGYLLSPQIRASPLTTAAQFSPYVAGMAFSPSPSLDYSPSSPGYSPAS
PAYSPTSPAYSPTSPSYSPTSPRYSPASPSYSPTSPRYSPPSPSYSPSSPVYTPTSPSYS
PPSPSYSPSSPAYTPTSPSYNPPSPSYSPSSPVYTPTSPSYSPTSPSYTPSSPSYSPTSP
RYSPISPSYSPTSPKYGPSVACPRLSPSSQHGQSSPNYRSTSPSYSPASPSYSPSSPVFS
PDSPSNSGTGPEYSPSSPQYSPSAVYSPSSPAYSTSSSDEDEESTG
NT seq 5361 nt   +upstreamnt  +downstreamnt
atggacatgcgattcccttactccccggccaacgtcgccaaggtcggcgccgtacagttc
gggatcctcagccccgaagaaattcggcatatgtcggtggtgcagatcgtgcatggcgcg
acgacggagcgggggaagcccaagctcggggggctcagcgacccgcgactcgggacggtg
aaccggaggatgagctgcgagacctgcaagggcaacatggcggagtgccccggccacttc
ggccacctcgagcttgccaagcccatgttccacatcgggttcctcaagacggtgctactt
atcacgcgctgcgtctgcttcaattgctccaagatcctcgtcgatgaggatgatcccaag
ttcaaggaagccctgaaaattcggaacccgaaaaataggttgcagagaatatatgttgcc
tgtaaaagcaagaagaaatgctctggtggtgatgatatcggtctccggcgtcaacaagat
tcacgaggaccaacagagaagagccgggtcgggtgtggtgcccggcagccaattataacc
atagatggcttgaagatggtcgctgaatataaagactcaaaaaggaaatcggatgaacaa
gaagaccgtctcgaaccatctgaacgaaaacaagtcctgtctgccgagacggttctcagc
gttctcgagaggataagcgatgaggattgtctgctactaggtctcgatcctaaatatgcc
cgtccagattggatgatattgcaagtccttccggttcctccgcctcccgtgagaccttcc
gtgatgatggattcgtccttgaggagcgaggacgatttgactcatcagttggcaatgata
attaggcataacgagaatttgaggcagcaggaaaggagcggagctcctgctcacttcatc
tcggagcttgcccaagtgttgcaatttcacgtcgccacttactttgataatgagcttccg
ggtcagccaacagcgacgcatcggtcagggcgacccatcaaatctatttgcagtagactg
aagggtaaaggcggtcgaatcagaggtaatttgatgggaaagcgcgtcaacttttccgca
cgaacggtcatcacgccggacccgacgattaacatcgacgaactgggcgttccttggagc
atagcttcgaacctcacgtacccggaaactgtgaccgcatacaacatcgagagactgagg
gaactcgtggaaaacggtccgcatcctcctcctggaacgcccggcgcaaattacattatc
cgggacgacggtcaaaggctcgatcttcgatacgtgaagaaaagcagcgatcgccatttg
gagctcggatacaaggttgaacgccatttacgtgacggcgactacgttctcttcaaccgg
cagccgagtctccacaagatgtccatcatgggtcaccggataaaacttatgcctcactcc
acttttcgcctgaatctttgtgtcaccacgccatataatgctgactttgatggagatgaa
atgaacatgcatgttccccagtctttggaaaccagagcagaagtcatagagctaatgatg
gttcccaagtgtatcgtctcgccgcaatcgaatcgccctgttatgggtatcgtccaggat
accctcctcggatgtcgcaagatcacggcgagggacaccttcatagaaaaggatgtcttc
atgaacatcttgatgtggtgggaagacttcgatggaaagatacccgctcctgccgtactg
aaaccaaggccgctgtggacggggaagcaagttttcaaccttatcatcccgaagcaaata
aatctgatgaaattttcaggatggcacgcagaaacagagaccggtttcatcactccagga
gataccgtcgttaggatcgagaagggggagcttctctcgggcaccctttgccggaaaaca
ctagggacatctcccggaagcctcattcacgtcatctgggaagaagttgggccggatgca
gctcgcaagtttctggggcacgcgcagtggctcgtgaaccattggctgctgcagaatggc
tttagtatgggaatcggagacacgattgccgacgcggcaaccatggagaagatcaatgaa
acgatatcaaaagctaaaaatgatgtcaaagaactcatcaagcttgcgcaggaaaagcaa
ttcgaagctgagcccgggcgaaccatgatggagtcattcgagaatagagtcaaccaggtt
ctgaacagggcgcgtgatgatgccggcagtagcggccagaagagcttatccgagagcaac
aacctgaaggccatggttaccgcaggttcgaaaggtagctttatcaacatctcacagatg
accgcctgcgtggggcagcagaatgtcgagggcaaacgaattccgtttgggttcgtggat
cgaacgttgcctcactttactaaagatgactatgggcctgaaagccgcggtttcgtggag
aactcttaccttcgcggtttgacaccacaggaattcttcttccatgccatgggaggtagg
gaaggtctggtcgataccgccgtcaagacttccgagaccggctacattcagcgtcgtctt
gtgaaggcgatggaggatatagtggttacgtacgatggtaccgtgaggaattctctaggg
gatgtcattcagttcttatacggagaagatggtatagatgctgtttggatcgagtcacag
aagttggattcgttgaggatgagaaagacagaattcgagagcgttttccggtaccagctg
gatgatgtccactggaatcctagctacctgcaggaggagcatgtcgaggatctgaaaacc
atccccgaatgcagagatgtgttcgatgctgaggttcagaaattagaggcagatcggtac
caacttggcactgagatcgccaccaccggcgatgccacgatgcatatgcccgtgaatcta
aaaagactcatctggaacgcacaaaagacattcaagatcgatccgagaaggccatctgat
atgcacccgatggagatcgtggacgctgtcgacaagttgcaagaacggctgaaagtcgtt
cccggcgatgattttttgagcatggaggctcagaggaatgcgactttactcttcggtatc
ttactgcgtagcacgttagccagcaaacgtgtgatgaaggagtacaggcttactcgtgag
gcattcgaatgggtcatcggcgagatagaatcccggtttgtgcagtcactagtatcgccc
ggcgagatgatcggttgcgtagccgcccaatccatcggagagccagcgacgcagatgacc
ctcaacactttccactatgctggagtgagcgccaagaacgtcactctcggtgttcccagg
ttgagggagatcattaatgtggccaagcaaatcaaaaccccttctctttgtgtgtacttg
aagcccgaggtcaggcacgagaaagagaaggctaagcaggtgcaatgtgcactggaatac
accacattgcgcagcgtcacgcacgcaaccgagatatggtatgatcccgatcctaggagc
accgtcatcgaggaagacgtcgagttcgtcaggtcatattatgaaatgccggacgaggac
actgcttccgaaaacatatctgcatggctgcttcgtatcgaactgaatcgtgagatgatg
gtggataaaaagttggccatggcggacatcgcagagaagatcgatgacgaattcggtgat
gatttaagctgcatctttaatgatgataatgcagataagctcatgctccgtatccgcatc
acgaacgatgatgcacccaaaggagaagtacaggatgaatcggatgaggatgacgtgttt
atgaaaaagatcgagagcaacatgctgaccgaaatggcactccgcggcatccctgaaatc
aaaaaggtttttatcaagtcagcaaaaaacagtaggtttaatgacgaggaaggcttcgaa
caagctgtggagtggatgctggacacggaaggcgtcaatctcctggccgtcatgtgccac
gaagacgtcgatgcaacgaggaccaccagcaatcacttggtcgaagttatagaggttctg
ggcatcgaggctgtccgacgagctctcttggatgagttgcgtgcggtcatatcgttcgac
ggatcttatgtgaactaccgccacttggctattctttgtgacacgatgacctacagaggc
cacctaatggccatcacccggcatggtatcaatcggaacgacaccgggcctctgatgaga
tgttcgttcgaggaaaccgtggagatcctcctcgacgccgctgtgtactccgaagaagac
caccttagaggagtcacggagaacatcatgctcggacagctcacgccggtcggaactggg
gcctgtgcactgtacttgaatgatcggatgttgcaacaggcgatcgagcttccgcttccg
agttacatgatggacggtggtggatttgatttcggaacgacaccatctgcttcacccaat
tatgcttgggcatcttatcacgagggaatgatgtccccgggttacttgctgagtccacag
atccgtgcttcacccctcacgacggctgctcagttttctccttatgttgctgggatggct
ttctcccccagtccgtccttggattatagcccatcatctccgggttatagccctgcttct
ccggcatatagtcctaccagtcctgcttactctcccacaagtccatcatattcgccaaca
tctccccgttacagccccgcctctcccagttacagccctacatctccccgctacagtcct
ccttcaccgagttacagccctagctctccagtttacactccgacatcacctagctacagt
cctccttcaccgagttacagccctagctctccagcttacactccaacatcacctagctac
aatcctccttcaccgagttacagtcctagctctccagtttacactccaacatcacctagc
tacagtcctacatcaccttcctatactccaagctctccatcatacagtcctacatctccc
agatacagccccatatctccaagttacagtcctacctcaccaaagtacggtccttcggtt
gcatgtccaaggctgtctccgtccagtcaacatggtcaatcatctccaaactacagatca
acttcgccatcgtattcacctgcatctccatcatactccccatcaagtcctgtattcagc
cctgacagcccgtccaactccggaacaggaccggaatacagcccaagttctccacaatac
agtccgagtgcagtctactcaccgtcatcaccagcttactcgacatcatccagcgacgag
gatgaagaaagcacaggctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (138)   
   KEGG ORTHOLOGY (1)   
   RefGene (134)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (157)   

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