KEGG   Musa acuminata (wild Malaysian banana): 103979444
Entry
103979444         CDS       T03447                                 
Name
(RefSeq) zinc finger CCCH domain-containing protein 27-like
  KO
K13192  RNA-binding protein 26
Organism
mus  Musa acuminata (wild Malaysian banana)
Brite
KEGG Orthology (KO) [BR:mus00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mus01009]
    103979444
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mus03019]
    103979444
   03041 Spliceosome [BR:mus03041]
    103979444
Protein phosphatases and associated proteins [BR:mus01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     103979444
Messenger RNA biogenesis [BR:mus03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     103979444
Spliceosome [BR:mus03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    103979444
SSDB
Motif
Pfam: Glutaredoxin RRM_1 Nup35_RRM_2 Nup35_RRM PHM7_cyt RNA_bind Filo_glycop zf_CCCH_4
Other DBs
NCBI-GeneID: 103979444
NCBI-ProteinID: XP_009393869
UniProt: A0A804IDY1
Position
3:20069375..20080713
AA seq 1044 aa
MALAKAKDFVSSAPVVVFSKTNCAHCEWVKVLLTQLGVGFKVIELDLESDGSDIQSALAE
WTAQRKLPIVFIGGNHIGGCERTKAFFMRMLHALEDASMVKIGEHLHIIEKLKLSSPPAV
DTVQLRSQLPTDKSHSVSVTPVIDSEDQEVSDDDDRNHKHRRREAQANTFGNDVQEPSMR
QINRKRNRPLESRKMFHDSDNNSNIERDVSSSFEKRRPIFTPATGRPPVGKGRGRGRGRS
IVSWSQQDCRFNPIDTLDFASQVVSQGLPTHPGLFVGTGIPNATTTQNASWGTYGFVPGM
SNRILDPLQPLGLQGTLQSTIAPLFNMGMPRQRCRDFDEQGFCLRGDMCPMEHGVNRIVV
EDVQSLSQFNLPVSDPNSNALGIQSGSGSLPSIRASPGLFTGSKFVPAKDGKPILSDDAL
KLSGVSSASVVAEADVYDPDQPLWNNKCSETSGTGLMLPLLNNDEPLWTLDSSQQSLVSS
NGFQNEQGSRPFRENIGTQNTNSSVWGRIRQNNRSEMGIKTNNNSVSTSHISDEMKEDNE
KSTVKTSSIPEKQNTAEMNQKAIVRQSLPRLYADSSRHNGRMSQKASRTLYVHGIPEKNN
TKDALFSHFQKFGEVVDIYIPLNSEKAFVQFSKREEAEAALEAPDAVMGNRFIKLWWANR
DRIHDAGKSSHHSKLPLSSSMGVSGLSSYLSGTDKEEGNLKSTVPTGSKTPSELSVTVAG
PKGLSANAQKIASPMPKKLDGLELLKEELRKKQEILAQKRDEFRRQLDKFEKQSISVRRG
EVVSEQAAKKLKVDMGNEAAKSWTAIAPITTAGTLQEVEKTRKSEAVLVSPTSIANSTIL
QNCNTEQTSHPSMPKSDMCRLDNQSTSFRILPPLPADLADVAILQDHFSSFGDLASIVLE
EHGERSDNDGMKTPENFCAHITFTSCDSAERAYVGGQCWQGHSLHFMWLSESDNSNKVCD
SQETLGPPGSSSADIQDGPVKSVMSSPTEGTSLDGVICKVTVVEVESNSGVEDVHCYHSD
MLNTTASRSNVSVAEDKMSIDLAK
NT seq 3135 nt   +upstreamnt  +downstreamnt
atggcgctcgccaaggccaaggatttcgtctcctccgctcccgtcgtcgtattcagcaag
acaaactgcgcacactgtgagtgggtaaaggtgttgctcacacaattaggagttggtttt
aaagtgattgagttggatcttgaaagtgatggatctgatatacaatctgcactagcagaa
tggactgctcaaaggaaattgccgattgtttttattggtggaaatcacattggtggttgt
gaacgtacaaaagccttcttcatgagaatgctacatgccctcgaagatgcttcaatggtg
aagattggtgagcaccttcatattattgagaagttaaagctgtcttcgcctcctgctgtc
gatactgtacaactgagaagtcagttgcctactgataaaagccactcagtgtctgtcaca
ccagttattgattctgaagaccaagaagttagtgatgatgatgatcgcaaccataaacat
cgtaggagggaggctcaagccaatacttttggcaatgatgttcaagaaccatctatgcgg
cagattaatagaaaaagaaatagacctcttgagagtaggaaaatgttccatgacagtgat
aacaacagcaatattgagagagatgtctcttccagttttgagaagcggcggccaatcttc
acgccagccacaggacgtcctccagtaggaaaaggaagaggtagaggaagaggaaggagt
attgtatcctggagccaacaagattgcagatttaaccctatcgacacgcttgattttgca
tcacaggtagtttcacaagggctgcctacacaccctggcctttttgttggaacaggtata
ccaaatgctacaactacacaaaatgcatcttggggtacatatgggtttgttcctgggatg
agcaacagaattttggatccactccagccacttggtttgcaagggacccttcagtctacg
attgctccattattcaatatgggaatgcctcggcagcgttgcagagactttgacgagcag
ggattttgcttgagaggggatatgtgtccaatggagcatggtgtaaatcggattgttgtc
gaagatgtgcagagcctttcccagttcaaccttccagtctcagatccaaattcaaatgcc
ctgggaattcaatccggttcaggatcattgccttctattagggcatctccaggcttattc
accggcagcaaatttgtaccagcaaaagatgggaaacccatcttgtctgatgatgcatta
aaactgagtggagtttcatctgcgtctgttgttgctgaagctgatgtatatgatcctgat
cagcctttatggaacaacaagtgttcagaaacatctggcactgggttaatgcttccttta
ctgaacaatgatgaacctctgtggactttggattcttctcaacagagtcttgtgtcatct
aatggctttcagaatgaacagggaagtagaccttttcgagaaaatataggtacacagaat
actaattcatctgtttggggccgaattcgccaaaataataggtcagaaatgggtataaag
actaataacaattcagtttctacaagtcatatttcagatgaaatgaaggaagataatgag
aaatctacagtgaaaacttcttccattccagaaaaacaaaatactgccgagatgaatcaa
aaagcaatagtgaggcagtccctccctagattatatgcagactctagtcgtcacaatggt
agaatgtcccaaaaagcttcacgtactctctatgtacatggtatacctgaaaagaacaac
acgaaggatgccctgttttcacatttccagaagtttggtgaggttgttgatatttatatt
ccactgaatagtgaaaaagcttttgtccaattttctaaaagggaggaggctgaagctgcc
cttgaagcacctgatgcggtaatgggtaaccgttttataaaactatggtgggccaaccgt
gatagaattcatgatgctgggaaaagtagtcatcatagtaagttgccgctgtcatcttct
atgggggtgtccggtctttcatcttatttatctggaactgacaaagaagaaggaaatctg
aaatccacagttccaacgggaagcaaaacaccttctgaattgtcggtgaccgtcgcgggt
ccaaaaggtttatctgcaaatgctcaaaaaatagcctctccgatgccaaaaaaattggat
ggcttggagcttttgaaagaggaacttcgaaaaaagcaggagattttggcccaaaagcgt
gatgaattccgccgccaattagacaaatttgagaaacaatctatttcagtcagaaggggt
gaagtagtctctgagcaggcagccaaaaaacttaaagtggatatgggcaatgaagctgca
aaatcttggacagccattgcaccaattactacagcaggcacactgcaagaagttgagaaa
acaagaaaatctgaggcggttcttgtttcacctacttcaatagcaaattcaacaatcttg
caaaattgcaacacagaacagacaagtcatccctccatgccgaagtctgatatgtgtaga
ctggataatcagtctacttcattcaggattcttcctcctctgccagctgatctcgcagat
gttgctattctgcaggatcatttttcatcatttggtgatcttgcctccatagtactggaa
gagcacggagaaagaagtgataatgacggcatgaagacacctgaaaatttttgtgctcat
ataactttcacctcatgtgactccgcagagagagcttatgttggtggtcagtgttggcaa
ggccatagtttgcactttatgtggctgagtgaatctgataactctaacaaagtctgtgac
agccaagaaactttaggcccacctggatcttcaagtgctgacatccaagatggaccagtg
aaatctgtgatgtcttcaccaactgaaggaacttcgttagacggtgtcatctgcaaggta
actgttgtggaagttgagtctaatagcggtgtggaggatgtacattgttatcacagtgat
atgctcaacacaacagcatcccgttctaatgtttcagttgctgaagataaaatgagcatt
gatcttgcgaagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (39)   

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