KEGG   Musa acuminata (wild Malaysian banana): 103996935
Entry
103996935         CDS       T03447                                 
Name
(RefSeq) pre-mRNA-splicing factor SYF1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
mus  Musa acuminata (wild Malaysian banana)
Pathway
mus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103996935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mus03019]
    103996935
   03041 Spliceosome [BR:mus03041]
    103996935
Messenger RNA biogenesis [BR:mus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     103996935
Spliceosome [BR:mus03041]
 Complex B
  Other components
   Prp19-related factors
    103996935
 Complex C
    103996935
SSDB
Motif
Pfam: TPR_14 Suf TPR_19 Mad3_BUB1_I TPR_12 TPR_15 TPR_2 TPR_5 PPR
Other DBs
NCBI-GeneID: 103996935
NCBI-ProteinID: XP_009416277
UniProt: A0A804KFV3
Position
9:complement(2900748..2908260)
AA seq 912 aa
MAVTPATGAAEISPDLYPSEEDLPYEEEILRNPFSLKLWWRYLIARSSAPFRRRAVIYER
ALKALPGSYKLWHAYLRERIDAVRGRPVSDPAFDSLNNTFERALVTMHKMPRIWLMYLAS
LSEQRLLTRGRRTFDRTLRALPVTQHDRIWEPYLALVSLPGVPVETSLRVFRRYLLFDPS
HIEDFINFLIASRRWQEAAERLAGVLNDDSFHSIKGKTRHQLWLELCDILTRHATEVSGL
KVDAIIRGGIRRYTDEVGRLWTSLADYYVRRGLYEKARDIFEEGIQTVTTVRDFSVIFES
YAQFEQSALAAKIETAEEEQEEDGEGEEDGRRDGLSKLTKKFLDGFWLNDDDDTDLRMAR
FENLLSRRPELLNSVLLRQNPHNVEQWHRRVKIFENDPAKQVFTYIEAVRTVDPMKAVGK
PHTLWIAFARLYESHNDLQNSRDIFEKAVNVNYKTVDHLATVWCEYAEMELRHKNFGRAL
ELMRKATAEPSVEVKRRVAADGNEPVQMRLHKSLRLWSFYVDLEESLGSLESTRAVYERI
LDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
TKLERARELFEHAVEQAPANEVKPIYLQYAKLEEEYGLAKRAMKVYDQAVKAVPDNEKLS
MYEIYIARAAAIFGVPKTREIYEQAIESGLPDNDAKKMCLKYAELERNLGEIDRARAIYV
FASQFADPRSDPDFWKVWKDFEIQHGNEDTFREMLRIGRSVSASYSQTHFILPEYLMQKD
QKLNLEEAVDTLKRAGVPEDEMATLERQLAPAAANSPVKNGGRMVNFVSAGSESQSDGGI
RLTANNEDIELPEESDSEDDKIEIAQKNVPASVFGDLAEKVAKDEDKGADAADNGGSSLL
GALERIKRQRRQ
NT seq 2739 nt   +upstreamnt  +downstreamnt
atggcggtgacgccggcgacaggggcggcggagatctcgccggacctgtacccgagcgag
gaggatttaccctacgaggaggagatcctccgcaaccccttcagcctgaagctttggtgg
cgctaccttatcgcccgatcctccgcaccattccggcgacgcgccgtgatctatgagcgc
gccctcaaggccctgccgggcagctacaagctgtggcacgcctacctccgcgagcgcatc
gacgccgtccgtggccgtcccgtctccgacccggccttcgactccctcaacaacaccttc
gagcgcgcccttgtcaccatgcacaagatgccccgcatctggctcatgtacctcgcttcc
ctttccgaacagcgtctcctaacccgcggccgccgcacattcgatcgcaccctacgcgct
cttcctgtcacccagcacgaccgcatctgggagccctacctcgccctcgtctctctcccc
ggcgtccccgtcgagacctctctccgcgtcttccgccgctacctccttttcgacccgtcc
cacatcgaggacttcatcaacttcctcattgcctcccggcgctggcaggaggccgccgag
cggcttgcaggtgtgctcaacgatgacagcttccactccatcaagggcaagacccgacat
cagctgtggctcgagctctgcgacattctcacccgccacgccactgaggtatcgggcctc
aaggtcgacgccatcatacgtggtggcatccggcggtacaccgatgaggtcgggcgcctg
tggacgtcccttgcggattactatgtccgcaggggtttgtacgagaaggcgagggacatc
tttgaggagggcattcagactgtgactacggttagggacttcagtgtcatctttgagagt
tatgcgcagtttgagcagagcgcccttgctgcaaagatcgagacagccgaggaggaacag
gaggaggatggggaaggagaggaggatggcaggagagatggtttgtcaaagcttactaag
aaattcctagatggcttctggttgaatgatgacgacgacaccgatctcaggatggcaagg
tttgagaaccttctctcccgaaggccagagctccttaacagtgtgctcctacggcagaat
cctcacaatgtggagcagtggcacaggcgagtgaaaatttttgagaatgaccccgcaaag
caggttttcacctatatagaggcagtgagaacagtcgatcccatgaaagcagtgggtaag
ccccacacactttggattgcctttgcacggctgtatgagagccacaatgatcttcagaat
tccagagatatttttgagaaggctgtgaatgtgaactacaagactgttgaccatctagca
actgtttggtgtgaatatgctgaaatggagttgaggcacaagaactttggaagggcactt
gagctgatgagaaaggccactgcagaaccctcagttgaagtcaagcgtagagttgctgct
gatggtaacgagcctgtacaaatgaggctgcacaaatctttgaggctttggagcttttat
gttgatcttgaggagagcctggggtcactggaatcaactcgagctgtttatgagagaatt
cttgatttgagaatagcaaccccccaaattattctaaattatgctttccttctcgaggag
aacaaatactttgaagacgcatttaaggtttatgagagaggtgtgaaaatatttaagtat
cctcatgttaaagatatatgggttacttacctatccaagtttgtcaaaagatatggaaag
accaagttggaacgtgcaagagagctttttgagcatgcagttgagcaggcacctgcaaat
gaggtgaagccaatatatctgcagtatgctaaactggaggaagaatatggtcttgcgaag
cgtgcaatgaaggtctatgatcaagcagtgaaggctgtccctgacaatgaaaaattgagc
atgtatgagatttacatagctcgagcagctgcaatttttggtgttcccaaaactagagag
atatacgagcaagcaattgaatcaggtctgcctgataatgatgcaaagaaaatgtgcttg
aaatatgccgaacttgaaagaaatctaggagaaatagatcgtgctcgtgcgatctatgta
tttgcatcacaatttgcagatccacggtctgatcctgatttctggaaagtatggaaagat
tttgagattcaacatggtaatgaagataccttcagggaaatgcttcgcatcggccgcagt
gtttctgccagttatagtcagacacatttcattcttcctgaatacttaatgcaaaaggat
cagaagctaaatttggaagaagcagtggatactctaaagcgtgcaggcgtccctgaagat
gaaatggccactctagaaaggcaattggctcctgcagctgccaattctcctgttaagaat
ggtggcagaatggtaaactttgtcagtgctggatctgagtcacaatctgatggtggtata
cgactgactgcaaacaatgaggatatcgagttgccagaagagagtgattcggaggatgat
aaaattgaaattgcccaaaagaatgtccctgcttctgtatttggggacctcgcagaaaaa
gttgccaaggatgaggacaagggagctgatgctgcagataatggtggcagtagtcttcta
ggagcacttgagagaataaagaggcaaaggcggcaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (35)   

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