KEGG   Flagellimonas oceani: GVT53_17230
Entry
GVT53_17230       CDS       T06500                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mut  Flagellimonas oceani
Pathway
mut03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mut00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GVT53_17230 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mut03019]
    GVT53_17230 (rnr)
   03016 Transfer RNA biogenesis [BR:mut03016]
    GVT53_17230 (rnr)
Enzymes [BR:mut01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     GVT53_17230 (rnr)
Messenger RNA biogenesis [BR:mut03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GVT53_17230 (rnr)
Transfer RNA biogenesis [BR:mut03016]
 Prokaryotic type
  tRNA degradation factors
   GVT53_17230 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 S1 Fe_hyd_lg_C
Other DBs
NCBI-ProteinID: QII46350
UniProt: A0A6G7J6M8
Position
3813976..3816159
AA seq 727 aa
MSKKKKRAGSQRKNEITKGIFTVLEKEPSKSFNYKQIASKLGIDDTQDRNLLIKRLGQLK
AGERILEPERGKYQKKQSLHTYYTGRVDLTTSGNAYIIVDELEDDIFVQNNNLNRAFHGD
TVEVFIKPRRKSKKMEGEISKVLERKKTSYVGIVDKQKSFAFVRPTDSRMYTDIFVPPEK
LKKANDGDKVLVNLGDWPDDTDSPYGEIVEVLGRPGEHNTEIHSILAEYGLPHEFPYEVE
QFAKTLDTSIKESEIAKRRDMRDVLTFTIDPKDAKDFDDALSFRKLENGNYEIGIHIADV
SHYVQPDTILEDEAYDRATSVYLVDRVVPMLPEVLSNMACSLRPNEEKYTFSAVFEMDDN
AKLVKQWFGRTAINSNERFAYEEAQHIIETEQNNIPKEISIREGAYSVSDDVVDAVLTFD
RLAKIMRQARMDAGAISFDKIEVKFHLSEDNEPVGVFFKEAKDANKLIEEFMLLANRKVA
EFIGKQKKTFVYRVHDKPDEDKLMALNGVISRFGHSINLKDSKTINQSLNKLLEDVKGKK
EQNLVDTLAIRSMSKAIYTTENIGHYGLGFEYYTHFTSPIRRYPDVMVHRLLQHYLDKEK
APKADFYEEKCKHSSDMELLAANAERDSIKYMQIKFMEDHKDQEFLGVISGVTEWGIYVE
IVENKCEGMVRIRDIKDDYYVFDERQYAIIGERTKRMYQLGDEVYVMVKNTDLVKRHLDF
SLIGKKK
NT seq 2184 nt   +upstreamnt  +downstreamnt
atgtcaaagaaaaagaagagagctggtagtcagcgaaagaatgaaattacgaagggcatt
ttcaccgtactggaaaaggaaccatctaaaagcttcaattataagcaaatagcatcaaaa
ctcggaatagacgatacacaggaccgaaaccttttgatcaaacgtttgggacagttaaag
gccggtgaacgaattttggagcccgaacggggcaagtatcaaaagaagcaatcacttcat
acgtattacacaggtagggttgatttgaccacaagtggcaatgcctacattattgtggat
gaactggaagatgacatctttgtccagaacaataatttgaaccgtgccttccatggcgat
acggtcgaggtttttataaaaccgaggcgcaagagcaaaaaaatggaaggtgagatttcc
aaggtactcgagcgcaagaaaacatcttatgtaggtattgtagacaagcaaaaaagtttt
gcatttgtacgccctaccgattccaggatgtacacggatatatttgtcccgcccgaaaaa
ttgaagaaagcaaatgatggcgacaaggtattggtcaatctgggtgattggcccgatgat
accgattctccatacggcgaaattgtggaagtactgggacgccccggggaacacaacacc
gagatacattccattttggccgaatatggcctgccgcacgagtttccttatgaggtagaa
cagttcgccaaaacattggataccagtataaaggaatccgaaatagccaagcgaagggat
atgcgggacgtactcaccttcaccatcgacccaaaggatgccaaggattttgatgatgca
ctttcctttcgaaagttggaaaatggcaattatgagatcggtatccatatagccgatgta
tcacactacgtgcagccggataccattttggaggatgaagcctacgatagggccacatcg
gtatatttggtggacagggtggttcctatgttgcccgaggtactctccaatatggcctgt
tcgcttcgacccaacgaggaaaaatataccttttccgcagtttttgaaatggatgacaat
gccaaattggtaaagcaatggtttggtagaaccgccattaattccaacgaacgttttgcc
tacgaagaggcccagcatattattgagaccgagcagaacaatattccaaaggaaatatcc
ataagggaaggagcgtattccgtttcggacgatgttgtggatgccgttctcacttttgat
agattggcaaagataatgagacaggccaggatggatgccggtgccatttcttttgataaa
atagaggtgaagttccatctctccgaagacaatgagcccgttggggttttctttaaagaa
gcaaaggatgccaacaaattgatcgaggagtttatgctcttggccaatagaaaggtggcc
gaatttatcggcaaacagaagaaaacgtttgtgtatcgggtgcacgacaagcccgatgag
gataaattaatggccctgaacggcgttatttccagattcggacacagtatcaacctaaag
gacagtaagaccattaaccagtccctgaacaagttattggaggatgtaaagggcaaaaaa
gaacaaaatttagtggatacgttggccatccgcagtatgagcaaggccatttataccacg
gaaaatataggccactacggacttggctttgaatattatacccattttacctcgcccata
cgccgttatccggacgtaatggtccaccgtttgttgcaacattatctggataaggaaaaa
gccccaaaagctgatttttacgaggaaaaatgcaaacattcttcggatatggaactattg
gccgccaatgcggagcgcgattccatcaagtatatgcagatcaagtttatggaagatcac
aaggaccaggaattccttggtgttatttccggagttaccgagtggggcatttatgtggaa
attgtggagaacaaatgtgagggcatggtccgtatccgggacatcaaagatgattattat
gtatttgatgaacgccagtacgccataatcggggaacgtaccaaacggatgtaccagctt
ggggacgaagtttatgtaatggtgaagaacacggatttggttaaacgccatctggacttt
tcgttgatcggtaaaaagaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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