KEGG   Mycolicibacterium vanbaalenii: Mvan_2112
Entry
Mvan_2112         CDS       T00449                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mva  Mycolicibacterium vanbaalenii
Pathway
mva03030  DNA replication
mva03410  Base excision repair
mva03420  Nucleotide excision repair
mva03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mva00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Mvan_2112
   03410 Base excision repair
    Mvan_2112
   03420 Nucleotide excision repair
    Mvan_2112
   03430 Mismatch repair
    Mvan_2112
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mva03032]
    Mvan_2112
   03400 DNA repair and recombination proteins [BR:mva03400]
    Mvan_2112
Enzymes [BR:mva01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Mvan_2112
DNA replication proteins [BR:mva03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Mvan_2112
DNA repair and recombination proteins [BR:mva03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Mvan_2112
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Mvan_2112
   MMR (mismatch excision repair)
    DNA ligase
     Mvan_2112
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Mvan_2112
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH BRCT_2
Other DBs
NCBI-ProteinID: ABM12927
UniProt: A1T6X7
Position
2252981..2255104
AA seq 707 aa
MSSKATQDPEAVLAEQSDDATEAGLRRQWQELADEVRDHQFRYYVRDAPIITDAEFDAML
RRLEALEEAHPELRTPDSPTQLVGGAGFATDFTAAEHLERMLSLDNVFTPDELAAWAARI
RTEIGADAQYLCELKIDGVALSLVYRDGRLERGATRGDGRTGEDVTLNARTIEDVPEKLT
GTEEFPLPSVLEVRGEVFFRIADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTAR
RRLRMICHGLGHIEDAAGFPFRTLHDAYRALQAWGLPVSPHTAQVTGLDAVTERIAYWGE
HRHDVEHEIDGVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEAQTKLLDIRVNVGRTG
RVTPFAYMEPVKIAGSTVGLATLHNGSEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLR
DGSEREFVMPTHCPECGTELAPAKEGDADIRCPNSRTCPAQLRERVFHVAGRGAFDIEGL
GYEAAIALLQARVITDEGDLFTLTADDLLRTDLFTTKAGELSANGKRLLTNLGKAKAQPL
WRVLVALSIRHVGPTAARALATEFGSLDAIVAASEEELAAVEGVGPTIAAAVTDWFTVDW
HRTIVDKWRAAGVRMADERDASIERTLDGLSIVVTGSLTGYSRDEAKEAIIARGGKAAGS
VSKKTAYVVAGDSPGSKYDKAIELGVPVLDEDGFRRLLENGPDTPDS
NT seq 2124 nt   +upstreamnt  +downstreamnt
gtgagttccaaggcgacccaggatcccgaggcggtgctggccgagcagtccgacgacgcc
actgaagccggcctgcgccggcaatggcaggagctcgccgacgaggtgcgcgaccaccag
ttccgctactacgtgcgtgacgcgccgatcatcaccgacgccgagttcgacgcgatgctg
cgcaggttggaggccctcgaggaggcccaccccgagctgcgcaccccggattcaccgacc
cagctggtgggtggggccgggttcgccaccgatttcaccgccgccgagcacctcgagcgg
atgctcagcctggacaacgtgttcacccccgacgagctcgccgcctgggccgcccggatc
cgcaccgagatcggtgcggacgcccaatacctgtgcgagctgaagatcgacggggtggcg
ctgtcgctggtctaccgcgacggccggctggagcgtggggccacccgcggtgacggccgc
accggtgaggacgtcacactcaatgcccgcaccatcgaggacgttcccgaaaagctcacc
ggcactgaggaattcccgcttcccagcgttctcgaggtgcgcggtgaggtgttcttccgg
atcgccgacttcgaggacctcaacgccgggctggtcgccgagggcaaaccgccgttcgcc
aacccccgtaacagcgcggccggctcgctgcgccagaagaacccggccgtcaccgccagg
cgcaggctgcggatgatctgccacggcctcggccacatcgaagacgctgcgggcttcccc
ttcaggacgttgcacgacgcgtaccgcgcgctgcaggcctgggggttgccggtctcacca
cacaccgcccaggtcaccggcctggacgcggtcaccgaacgcatcgcctactggggcgag
caccggcacgacgtcgagcacgagatcgacggcgtggtggtcaaagtggacgaggtggcg
ctgcaacggcgcctcggggccacgtcgcgcgccccgcgctgggcggtcgcctacaagtat
ccgcccgaggaggctcagaccaagctgctcgacatccgggtcaatgtcggacgcaccggc
cgggtgaccccgttcgcctacatggagccggtcaagatcgcgggctccacggtcgggctg
gccacgctgcacaacggctccgaggtcaaacgcaagggcgtgctgatcggcgacaccgtg
gtgatccgcaaggccggcgacgtgattcccgaggtgctcggaccggtcgtcgatctgcgc
gacggcagcgagcgcgaattcgtgatgccgacgcactgcccggagtgcggcaccgaactg
gcccccgccaaggagggcgacgccgacatccgctgccccaactcccgcacctgcccggcg
cagttgcgggagcgggtctttcacgtcgcgggccggggcgccttcgacatcgagggcctg
ggctacgaagccgcgatcgcgctactgcaggcccgcgtcatcaccgacgaaggcgacctg
ttcacacttaccgcagacgacctgctgcgcaccgacctgttcaccaccaaggccggcgag
ctgtccgccaacggcaagcggctgctcaccaacctgggcaaggccaaggcccaaccgttg
tggcgggtgctggtggcgctgtcgatccggcacgtcggaccgacggcggcgcgtgcgctg
gccaccgagttcggcagcctcgacgcgatcgtcgcggcctcggaggaggaactggccgcc
gtcgagggcgtcggccccacgatcgcggctgcggtcaccgactggttcaccgtcgactgg
caccgcacgatcgtcgacaagtggcgcgctgccggggtgcggatggccgacgagcgcgac
gccagcatcgaacgcactctggatgggctgtcgatcgtcgtcaccggatcgctgaccggc
tacagccgcgacgaggcgaaggaggccatcatcgctcgcggcggcaaggcggccggttcg
gtgtcgaagaagaccgcctatgtggtggccggcgactcgcccgggtccaagtacgacaag
gccatcgagctgggagtgccggtgttggacgaggacgggttccgccggctgctcgaaaac
gggcccgacacaccggactcctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (30)   

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