KEGG   Mycolicibacterium vanbaalenii: Mvan_4345
Entry
Mvan_4345         CDS       T00449                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mva  Mycolicibacterium vanbaalenii
Pathway
mva03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mva00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mvan_4345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mva03021]
    Mvan_4345
   03019 Messenger RNA biogenesis [BR:mva03019]
    Mvan_4345
Transcription machinery [BR:mva03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Mvan_4345
Messenger RNA biogenesis [BR:mva03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Mvan_4345
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 NACHT AAA_22 VWA_2
Other DBs
NCBI-ProteinID: ABM15122
UniProt: A1TD72
Position
complement(4658253..4660307)
AA seq 684 aa
MTDTDLFTAGSADSGELPNTVTATNSASSEQAGAPAAAPAADEAPAATRARRGALTSLVL
PELRAMAKEIGVEGASGMRKSELIAAIRERRGEANGKPAAKSDTAEATAAAPSGDTSAPA
GDTAAPAGDTAAPAGDTSADSAASEQAAEAQPQQRRRERRGSSREQGGPNAGEQAGDQAG
GQDKTEAGRPESGQAEGRGKNAPQEQQGGGRETRERTESQGGQASKAEGRADSDTRSDGG
DQQGGQNRGRGGEGGGNRAADNDDDGDGRQGRRGRRFRDRRRRERGGEGGGGGDRDTELR
EDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVPKD
GEQSNQRQKFNPLVRLDSVNGGPVEEAKKRPEFQKLTPLYPNTRLRLETSSDKLTTRVID
LIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSV
KGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGR
ILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAEL
KLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAVVHKLRRVLSGLDPHQAIDLLMSQL
RKTKNNYEFLVQVSKNTPGGVDND
NT seq 2055 nt   +upstreamnt  +downstreamnt
gtgaccgatacggacctcttcacggctggcagcgccgacagcggcgagctgccgaacacc
gtgactgcaacaaacagcgcctcatccgagcaggcaggtgcgcccgctgcggcgcccgcc
gcggacgaggccccggcggcgacccgcgcccgccgtggtgctctgaccagcctcgtgctg
cccgagctgcgggccatggccaaagagatcggcgtcgaaggcgcctccggtatgcgcaag
agcgagctgatcgccgccatccgtgagcgtcgcggcgaagccaacggcaagcccgcggcc
aagagcgacaccgcggaagccactgccgccgccccctccggcgatacctcggccccggcc
ggcgacaccgcggccccagccggcgataccgcggccccagccggcgatacctccgccgac
agtgcggcctccgagcaggccgccgaagcgcagccgcagcagcggcgccgtgagcgccgc
ggatcctcgcgtgagcagggtggacccaacgccggtgaacaggccggcgaccaggccggc
gggcaggacaagacggaagccggacggcccgagtcgggtcaggccgaaggccgcggcaag
aacgcaccgcaggagcagcagggcggcggccgcgagacccgcgagcgcacagaaagccag
ggcggccaggcctccaaggccgagggcagggccgactcggatacccgctccgacggcggt
gaccagcagggcgggcagaaccgcggccgaggcggcgaaggtggcggcaatcgcgctgcc
gacaacgacgacgacggcgacgggcgtcagggccggcggggtcggcgattccgcgaccgc
aggcgccgtgagcgcggcggcgagggtggtggcggcggtgaccgcgacaccgaactccgc
gaggacgacgtcgtacagcccgtcgcgggcatcctcgatgtcctcgacaactacgcgttc
gtccggacctcgggctacctcgccgggccgaacgacgtctacgtctcgatgaacatggtc
cgcaagaacggtctgcggcgcggcgacgcggtgaccggtgcggtccgcgttcccaaagac
ggagagcagtccaatcagcggcagaagttcaacccgctggtgcgcctcgactccgtcaac
ggcgggcctgtcgaagaggccaagaagcggcctgagttccagaagctcacaccgctctac
ccgaacacgcgccttcgtctggagaccagttcagacaagctcaccacccgtgtgatcgat
ctgatcatgccgatcggcaaggggcagcgtgcgctgatcgtgtcgccgcccaaggccggc
aagacgacgatcatgcaggacatcgcgaacgcgatcacccgcaacaacccggaatgccat
ctgatggtcgtgctcgtcgacgagcgccctgaagaggtcaccgacatgcagcgctcggtc
aagggcgaggtcatcgcgtcgaccttcgaccggccgccgtcagatcacacgcaggccgcc
gagctcgccatcgaacgggccaagcgcctggtcgagcagggcaaggacgtcgtggtgctg
ctcgactcgatcacccgtctgggacgtgcgtacaacaacgcgtcgccggcgtcgggccgc
atcctgtccggtggtgtggattcgacggcgctgtacccgccgaagcgattcctcggcgcg
gcacgcaacatcgaagagggcggctcgctgacgatcatcgccacggccatggtcgagacc
ggctccaccggtgacacggtgatcttcgaggagttcaagggcaccggcaacgccgagctc
aaactcgaccgcaagatcgccgagcgccgcgtgttcccggcggtcgacgtcaatccgtcc
ggcacccgcaaggacgagctgctgctctcgcccgacgagttcgcggtcgtgcacaagctg
cgccgagtgctgtccggcctcgacccgcatcaggcgatcgacctgctgatgagccagctg
cgcaagaccaagaacaactacgagttcctggttcaggtctccaagaacactcccggcggc
gtcgacaacgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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