KEGG T03029: X875

Mannheimia varigena USDA-ARS-USMARC-1388: X875_14900

Entry

X875_14900        CDS       T03029

Name

(GenBank) DNA-binding protein for site-specific recombination and inversion

K03557

Fis family transcriptional regulator, factor for inversion stimulation protein

Organism

mve Mannheimia varigena USDA-ARS-USMARC-1388

Brite

KEGG Orthology (KO) [BR:mve00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mve03000]
    X875_14900
   03036 Chromosome and associated proteins [BR:mve03036]
    X875_14900
   03400 DNA repair and recombination proteins [BR:mve03400]
    X875_14900
Transcription factors [BR:mve03000]
Prokaryotic type
  Helix-turn-helix
   Other families
    X875_14900
Chromosome and associated proteins [BR:mve03036]
Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    X875_14900
DNA repair and recombination proteins [BR:mve03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      X875_14900

SSDB

Motif

Pfam:

HTH_8 HTH_30 Phage_NinH HTH_28 UPF0175 Xre-like-HTH

Other DBs

NCBI-ProteinID:

AHG80108

Position

1576813..1577109

AA seq 98 aa
MLEQQPTQNPLTVTMLNAQAQQVNKPLRDNVKAALKNYLSQLNGEDPTELYELVLSEIEH
PMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG

NT seq 297 nt +upstreamnt +downstreamnt
atgttagaacaacaacctacacaaaacccattaacagtaacaatgttaaatgcacaggca
cagcaggttaataaacctctgcgcgataacgttaaagcagcattaaaaaactatttatct
caattaaatggtgaagatccaacagaattatacgaattagtattatctgaaatcgaacac
ccgatgttagatatggtgatgcaatatactcgcggtaaccaaactcgtgctgcaacaatg
ttaggcattaaccgtggcacattacgtaaaaaattaaaaaaatacggtatgggttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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