KEGG   Mannheimia varigena USDA-ARS-USMARC-1388: X875_6420
Entry
X875_6420         CDS       T03029                                 
Name
(GenBank) 60 kDa chaperonin
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
mve  Mannheimia varigena USDA-ARS-USMARC-1388
Pathway
mve03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mve00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X875_6420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mve03019]
    X875_6420
   03110 Chaperones and folding catalysts [BR:mve03110]
    X875_6420
   03029 Mitochondrial biogenesis [BR:mve03029]
    X875_6420
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mve04147]
    X875_6420
Enzymes [BR:mve01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     X875_6420
Messenger RNA biogenesis [BR:mve03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     X875_6420
Chaperones and folding catalysts [BR:mve03110]
 Heat shock proteins
  HSP60 / Chaperonin
   X875_6420
Mitochondrial biogenesis [BR:mve03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    X875_6420
Exosome [BR:mve04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   X875_6420
  Exosomal proteins of other body fluids (saliva and urine)
   X875_6420
  Exosomal proteins of breast cancer cells
   X875_6420
  Exosomal proteins of colorectal cancer cells
   X875_6420
  Exosomal proteins of bladder cancer cells
   X875_6420
SSDB
Motif
Pfam: Cpn60_TCP1 DUF5891
Other DBs
NCBI-ProteinID: AHG79260
Position
671997..673673
AA seq 558 aa
MDACTIKNEEEKMAAKDVKFGNDARVKMLKGVNVLADAVKVTLGPKGRNVVLDRAYGAPT
ITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVA
AGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDSTVGQLIAQAMEK
VGKEGVITVEDGTGLEDALDVVEGMQFDRGYLSPYFINKPEAGTVELENPYILLVDKKVS
NIRELLPVLEGVAKAGKPLVIIAEDIEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAM
LQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVISKDNTTIIDGIGDETQIKGRVAQ
IRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEKKDRVDDALHATRAAVE
EGIVPGGGVALVRAATKVAATLKGDNEEQNVGFKLALRAMEAPLRQIVANAGEESSVVAR
NVKDGSGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFAASIAGLMITTECMITDLPKE
EKLDPAAMGGMGGMGGMM
NT seq 1677 nt   +upstreamnt  +downstreamnt
gtggacgcttgcactatcaaaaatgaggaagaaaaaatggcagcaaaagacgttaaattt
ggtaatgatgcacgtgtaaaaatgttaaaaggcgtgaatgttttagccgatgcagtaaaa
gtgactttaggcccgaaaggtcgtaacgtggtgttagatcgtgcttacggtgcaccaacg
attactaaagatggggtttcggttgctcgtgaaatcgaattagaagataaatttgaaaat
atgggtgctcaaatggtgaaagaggttgcctctaaagccaatgatgccgccggtgacggt
acaactaccgcaaccgtgcttgctcaagcgattgtgaacgaaggtttgaaagcggttgct
gccggtatgaacccaatggatttaaaacgtggtatcgataaagcggttgctgcggtagtt
gaagagttaaaagcgatttcaaaaccgtgcgaaacttcaaaagagatcgagcaagtggga
acaatttctgcaaactcagattcaactgtcggtcaattaattgctcaagcaatggaaaaa
gtgggcaaagagggtgtgattaccgttgaagacggtacaggtttagaagatgcgttagat
gtggttgaaggtatgcagttcgaccgtggttacttatcgccatacttcatcaacaaaccg
gaagctggcacggtagagttagaaaacccatacattcttttagtggacaaaaaagtctct
aacattcgtgaattattaccggtgttagagggtgttgcgaaagcgggcaaaccgttagtg
atcattgcagaagatatcgaaggtgaagcgttggctactttagtggtgaacacaatgcgt
ggtatcgtgaaagtggctgcggtgaaagcaccaggatttggcgatcgccgtaaagcgatg
ttacaagatattgcgatcttaactgcaggtactgtgatttcggaagagatcggtatggag
cttgaaaaagcaactttagaagagttaggtcaagcaaaacgtgtggtgatctcaaaagat
aacacaacgattattgacggcattggtgatgaaactcaaattaaaggtcgtgtagcacaa
attcgtcagcaaatcgaagattcaacgtcagattacgacaaagaaaaactgcaagagcgt
gtggcgaaattagcaggcggtgttgctgtgattaaagttggtgcagcaacagaagtggca
atgaaagagaagaaagatcgtgttgatgatgccttacacgcaactcgtgcagcggtggaa
gagggtatcgtcccaggcggcggcgtggcattagtgcgtgcggcaaccaaagtagcggca
accttaaaaggtgataacgaagagcaaaatgtagggttcaaacttgcattgcgtgcaatg
gaagctccattacgtcaaatcgtggcgaatgccggtgaagagtcttcagtggttgctcgc
aacgtgaaagatggttcgggtaactatggttataatgcaggtacagagcagtatggcgat
atgttagaaatgggtattttagatccaactaaagtaacccgttcagcattacaatttgca
gcttctattgcaggtttaatgatcacgacagaatgtatgatcacagacttaccaaaagaa
gaaaaattagatccagccgcaatgggcggtatgggtggaatgggcggaatgatgtaa

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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