KEGG   Mannheimia varigena USDA-ARS-USMARC-1296: X808_11040
Entry
X808_11040        CDS       T03027                                 
Name
(GenBank) Exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
mvi  Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    X808_11040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mvi03400]
    X808_11040
Enzymes [BR:mvi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     X808_11040
DNA repair and recombination proteins [BR:mvi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     X808_11040
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     X808_11040
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      X808_11040
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T KI67R GAGA
Other DBs
NCBI-ProteinID: AHG75627
UniProt: W0QBF2
Position
complement(1172814..1174361)
AA seq 515 aa
MSKNFTFFFYDYESFGVSPASDRPAQFAGIRTDENFNIVGEPVMFYCKQTPDYLPSPEAV
MVTGITPQQCNAEGLSEPEFAARIHAEFSQPNTCTIGYNNIRYDDEMTRYTFFRNFYDPY
EYSWKNGNSRWDLLDLVRACYALRPDGIEWVRDENGVPSFKLENLTKANGIAHENAHDAM
SDVYATIAMAKLIKEKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA
WVVPLAWHPTNPNAVIVCDLSGDMNGLLNENAETLRQRLYTKREELAENELPVPLKLVHI
NKCPILAPAKTLLPENAERLGIDRAFCLENLKALKAQKSLVREKVLEIFHDERTFEPSAN
VETTLYDGFFSTADKNNMAILRNLPPEELANHGLKFEDPRVEALLFHYRARHYPQTLSRA
EQVKWQKYCNQQIDAKAEQFAKSIDELFQQHHDNPEKVKLLENLTAYAELISQKQAVVYA
KNSAKEEKLVSDLNKVAEQNLDKAEKLKMLKELIK
NT seq 1548 nt   +upstreamnt  +downstreamnt
atgagcaaaaatttcacttttttcttttacgattacgaaagttttggggttagcccggct
tctgaccgtccggcacagtttgcaggtattcgtactgatgagaattttaatattgtcggt
gagccggtaatgttttattgcaaacaaacgccggactacctgcctagcccggaagcggtg
atggtgacaggtattacaccgcaacaatgtaacgctgaagggttgtctgaacccgaattt
gctgctcgtattcacgcagaatttagccagccaaacacttgcaccatcggttataacaat
atccgctatgacgatgaaatgacccgctacacctttttccgcaatttttacgatccgtac
gaatacagttggaaaaacggtaattctcgctgggatttgttggatttagtgcgggcttgt
tatgcactgcgtccggacggcattgagtgggtgcgagatgaaaacggcgtgccgagtttt
aaattagaaaatttgaccaaagcgaacggcattgcccacgaaaacgctcacgatgcgatg
tcggacgtttacgccaccattgcaatggcgaaattgattaaggaaaaacagccgaaatta
ttcgattttttctttaatttacgcagcaaaaaagaggtggaaaaactgattgacacaggt
gaaatgacgccacttgttcacgtttcgggaatgttgggaaactaccgtggcaacaccgct
tgggttgtgccgttggcatggcacccgactaatcccaatgcggtgattgtgtgcgattta
tcgggcgatatgaacggtttgctcaatgaaaatgcggaaactctacgccaacgcctatat
accaaacgtgaggagttagccgagaatgaactccccgtaccgctgaaattagtgcatatc
aataaatgcccgattttagccccggcgaaaacgttattacctgaaaatgccgaacgactt
ggaattgaccgtgcgttctgtttggaaaatttaaaagcgttaaaagcacaaaaatcgcta
gtgcgtgaaaaagtgctggaaatttttcacgatgaacgcacattcgagccttccgctaac
gtagaaactacgctttatgacggttttttctctaccgccgataaaaacaatatggcaatt
ttacgcaatttaccgccggaagaactggcgaaccacgggttgaaatttgaagatcctcgt
gtggaagcgttgctattccattatcgggcgaggcattatccgcaaacgctcagccgagcc
gagcaagtcaaatggcagaaatattgcaatcagcaaattgatgcaaaagcggagcagttt
gccaagtctattgatgagctgttccaacagcatcacgataatccggaaaaagtaaaatta
ttggaaaatttgaccgcttacgccgagctaatttcccagaaacaagcggtcgtttatgcg
aaaaattctgcaaaagaggaaaaattagttagcgatctcaataaagtcgccgagcagaat
ttagacaaagcggaaaaacttaaaatgttgaaggaattaatcaaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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